YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30063862, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30063862, gi|....

Description	E-value	Query Range	Subject Range
gi\|52212587, gi\|... - gi\|53722173\|ref\|YP_111158.1\| hypothetical protein BPSS1145 [Burkholderia pseudomallei K96243], gi\|52... gi\|134245139, gi... - gi\|134283390\|ref\|ZP_01770090.1\| putative hydrogenase, membrane subunit [Burkholderia pseudomallei 30... gi\|167723609 - gi\|167723609\|ref\|ZP_02406845.1\| hypothetical protein BpseD_31625 [Burkholderia pseudomallei DM98] gi\|167914905 - gi\|167914905\|ref\|ZP_02501996.1\| hypothetical protein Bpse112_30731 [Burkholderia pseudomallei 112] gi\|235000119, gi... - gi\|237507914\|ref\|ZP_04520629.1\| hydrogenase-4, E subunit [Burkholderia pseudomallei MSHR346], gi\|235... gi\|167922749 - gi\|167922749\|ref\|ZP_02509840.1\| hypothetical protein BpseBC_29612 [Burkholderia pseudomallei BCC215] gi\|217418481, gi... - gi\|217418481\|ref\|ZP_03449988.1\| putative hydrogenase, membrane subunit [Burkholderia pseudomallei 57...	193.0	[0..3]	[215..5]
gi\|67683138, gi\|... - gi\|90294700\|ref\|ZP_01214292.1\| hypothetical protein Bpse17_02000585 [Burkholderia pseudomallei 1710a... gi\|67756228, gi\|... - gi\|67756228\|ref\|ZP_00495114.1\| COG4237: Hydrogenase 4 membrane component (E) [Burkholderia pseudomal... gi\|76818420, gi\|... - gi\|76818420\|ref\|YP_335268.1\| hydrogenase 4 membrane component [Burkholderia pseudomallei 1710b], gi\|... gi\|167898187 - gi\|167898187\|ref\|ZP_02485589.1\| Hydrogenase 4 membrane component [Burkholderia pseudomallei 7894] gi\|254300490, gi... - gi\|83679827\|ref\|ZP_00941537.1\| COG4237: Hydrogenase 4 membrane component (E) [Burkholderia pseudomal...	193.0	[0..3]	[215..5]
gi\|167819739 - gi\|167819739\|ref\|ZP_02451419.1\| putative hydrogenase, membrane subunit [Burkholderia pseudomallei 91... gi\|167828124 - gi\|167828124\|ref\|ZP_02459595.1\| putative hydrogenase, membrane subunit [Burkholderia pseudomallei 9] gi\|126458319, gi... - gi\|82529713\|ref\|ZP_00888956.1\| COG4237: Hydrogenase 4 membrane component (E) [Burkholderia pseudomal... gi\|82535841, gi\|... - gi\|82535841\|ref\|ZP_00894853.1\| hypothetical protein Bpse110_02002887 [Burkholderia pseudomallei 1106... gi\|167742576 - gi\|167742576\|ref\|ZP_02415350.1\| putative hydrogenase, membrane subunit [Burkholderia pseudomallei 14... gi\|126222430, gi... - gi\|67738889\|ref\|ZP_00489511.1\| COG4237: Hydrogenase 4 membrane component (E) [Burkholderia pseudomal... gi\|167906549 - gi\|167906549\|ref\|ZP_02493754.1\| putative hydrogenase, membrane subunit [Burkholderia pseudomallei NC... gi\|254193479, gi... - gi\|67760677\|ref\|ZP_00499395.1\| COG4237: Hydrogenase 4 membrane component (E) [Burkholderia pseudomal... gi\|167839777 - gi\|167839777\|ref\|ZP_02466461.1\| putative hydrogenase, membrane subunit [Burkholderia thailandensis M... gi\|167849589 - gi\|167849589\|ref\|ZP_02475097.1\| putative hydrogenase, membrane subunit [Burkholderia pseudomallei B7... gi\|225927724, gi... - gi\|226200216\|ref\|ZP_03795761.1\| putative hydrogenase, membrane subunit [Burkholderia pseudomallei Pa...	193.0	[0..3]	[215..5]
gi\|91780245, gi\|... - gi\|91780245\|ref\|YP_555452.1\| hypothetical protein Bxe_C0177 [Burkholderia xenovorans LB400], gi\|9169...	192.0	[0..3]	[215..5]
gi\|89346796, gi\|... - gi\|89902059\|ref\|YP_524530.1\| hydrogenase 4 membrane component [Rhodoferax ferrireducens T118], gi\|89...	191.0	[0..2]	[215..4]
gi\|49610708, gi\|... - gi\|50120182\|ref\|YP_049349.1\| hydrogenase 4 membrane subunit [Pectobacterium atrosepticum SCRI1043], ...	189.0	[0..1]	[216..1]
gi\|83649969, gi\|... - gi\|83716144\|ref\|YP_439459.1\| hypothetical protein BTH_II1263 [Burkholderia thailandensis E264], gi\|8... gi\|167616027 - gi\|167616027\|ref\|ZP_02384662.1\| hypothetical protein BthaB_07021 [Burkholderia thailandensis Bt4]	189.0	[0..3]	[215..5]
gi\|54032099, gi\|... - gi\|91786820\|ref\|YP_547772.1\| hydrogenase 4 membrane component [Polaromonas sp. JS666], gi\|91696045\|g...	188.0	[0..2]	[215..4]
gi\|113868174, gi... - gi\|113868174\|ref\|YP_726663.1\| hydrogenase 4 membrane component (E) [Ralstonia eutropha H16], gi\|1135...	185.0	[0..1]	[215..3]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGSMIVNNL AGLMMLTSLF VISVKSYRLS CGFYACQSLV LVSIFATLSC LFAAEQLLIW  60
   61 SASAFITKVL LVPLIMTYAA RNIPQNIPEK AL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [93-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGPAMMALLA ALIVLLCAFV VQPVKLPMAT GLKPALAVAL GHFLLGLLCI VSQRNILRQI  60
   61 FGYCLMENGS HLVLALLAWR APELVEIGIA TDAIFAVIVM VLLARKIWRT HGTLDVNNLT 120
  121 ALKG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	11.200659
Match:	PF00420.15
Description:	No description for PF00420.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits