YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24052659, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24052659, gi|....

Description	E-value	Query Range	Subject Range
gi\|253974138, gi... - gi\|254162237\|ref\|YP_003045345.1\| hypothetical protein ECB_02152 [Escherichia coli B str. REL606], gi... EG14078 - DUF2135 family protein, putative host defense protein / DUF2135 family protein, function unknown; pr... gi\|170081845, gi... - gi\|170081845\|ref\|YP_001731165.1\| hypothetical protein ECDH10B_2383 [Escherichia coli str. K-12 subst... gi\|170019461, gi... - gi\|170019461\|ref\|YP_001724415.1\| hypothetical protein EcolC_1425 [Escherichia coli ATCC 8739], gi\|16... gi\|124526394, gi... - gi\|124526394\|ref\|ZP_01698347.1\| conserved hypothetical protein [Escherichia coli B], gi\|124501865\|gb... gi\|85675318, gi\|... - gi\|89109044\|ref\|AP_002824.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... YFAP_ECOLI - Hypothetical protein yfaP precursor - Escherichia coli gi\|75196268, gi\|... - gi\|75196268\|ref\|ZP_00706338.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c... EG14078 - DUF2135 family protein, putative host defense protein / DUF2135 family protein, function unknown; pr... gi\|194425069, gi... - gi\|83588211\|ref\|ZP_00926836.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|238860341, gi... - gi\|238901400\|ref\|YP_002927196.1\| hypothetical protein BWG_1999 [Escherichia coli BW2952], gi\|2388603... gi\|242377861, gi... - gi\|251785588\|ref\|YP_002999892.1\| hypothetical protein B21_02111 [Escherichia coli BL21], gi\|24237786... gi\|253772851, gi... - gi\|254288998\|ref\|YP_003054746.1\| hypothetical protein ECD_02152 [Escherichia coli BL21(DE3)], gi\|253...	443.0	[0..1]	[258..1]
gi\|218554788, gi... - gi\|218554788\|ref\|YP_002387701.1\| hypothetical protein ECIAI1_2303 [Escherichia coli IAI1], gi\|218361... gi\|218352564, gi... - gi\|218695832\|ref\|YP_002403499.1\| hypothetical protein EC55989_2474 [Escherichia coli 55989], gi\|2183... gi\|192932117, gi... - gi\|75259692\|ref\|ZP_00730994.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75238016, gi\|... - gi\|75238016\|ref\|ZP_00722021.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75211636, gi\|... - gi\|75211636\|ref\|ZP_00711715.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|157080779, gi... - gi\|75187015\|ref\|ZP_00700282.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|209919678, gi... - gi\|209919678\|ref\|YP_002293762.1\| hypothetical protein ECSE_2487 [Escherichia coli SE11], gi\|20991293...	441.0	[0..1]	[258..1]
gi\|74312747, gi\|... - gi\|74312747\|ref\|YP_311166.1\| hypothetical protein SSON_2284 [Shigella sonnei Ss046], gi\|73856224\|gb\|...	441.0	[0..1]	[258..1]
gi\|218365912, gi... - gi\|218559143\|ref\|YP_002392056.1\| hypothetical protein ECS88_2374 [Escherichia coli S88], gi\|21836591... gi\|117624420, gi... - gi\|117624420\|ref\|YP_853333.1\| hypothetical protein APECO1_4334 [Escherichia coli APEC O1], gi\|115513... gi\|226901067, gi... - gi\|237704701\|ref\|ZP_04535182.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	441.0	[0..1]	[258..1]
gi\|75231443, gi\|... - gi\|75231443\|ref\|ZP_00717812.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c...	440.0	[0..1]	[258..1]
gi\|110344026, gi... - gi\|110642434\|ref\|YP_670164.1\| hypothetical protein ECP_2269 [Escherichia coli 536], gi\|110344026\|gb\|... gi\|191170077, gi... - gi\|75243041\|ref\|ZP_00726747.1\| COG4676: Uncharacterized protein conserved in bacteria [Escherichia c...	440.0	[0..1]	[258..1]
gi\|91211519, gi\|... - gi\|91211519\|ref\|YP_541505.1\| hypothetical protein UTI89_C2507 [Escherichia coli UTI89], gi\|91073093\|...	438.0	[0..1]	[258..1]
gi\|227887283, gi... - gi\|227887283\|ref\|ZP_04005088.1\| signal peptide protein [Escherichia coli 83972], gi\|227835633\|gb\|EEJ... gi\|26248614, gi\|... - gi\|26248614\|ref\|NP_754654.1\| hypothetical protein c2768 [Escherichia coli CFT073], gi\|26109019\|gb\|AA...	436.0	[0..1]	[258..1]
gi\|91690224, gi\|... - gi\|91777564\|ref\|YP_552772.1\| hypothetical protein Bxe_B2571 [Burkholderia xenovorans LB400], gi\|9169...	381.0	[0..5]	[256..17]
gi\|126198079, gi... - gi\|254244701\|ref\|ZP_04938023.1\| conserved hypothetical protein [Pseudomonas aeruginosa 2192], gi\|194... gi\|15599683, gi\|... - gi\|9950725\|gb\|AAG07875.1\|AE004862_9 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|11348196 - pir\|\|D83085 conserved hypothetical protein PA4487 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|218893579, gi... - gi\|218893579\|ref\|YP_002442448.1\| hypothetical protein PLES_48671 [Pseudomonas aeruginosa LESB58], gi...	379.0	[0..1]	[258..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKIFLPLLL VALSPVAHSE GVQEVEIDAP LSGWHPAEGE DASFSQSINY PASSVNMADD  60
   61 QNISAQIRGK IKNYAAAGKV QQGRLVVNGA SMPQRIESDG SFARPYIFTE GSNSVQVISP 120
  121 DGQSRQKMQF YSTPGTG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [138-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIRARLRLVL SWDTDNTDLD LHVVTPDGEH AWYGNTVLKN SGALDMDVTT GYGPEIFAMP  60
   61 APVHGRYQVY INYYGGRSET ELTTAQLTLI TDEGSVNEKQ ETFIVPMRNA GELTLVKSFD 120
  121 W

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits