YRC Public Data Repository - Protein Structure Prediction

Protein:	FABA_ECOLI
Organism:	Escherichia coli
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FABA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|88859243, gi\|... - gi\|88859243\|ref\|ZP_01133883.1\| beta-hydroxydecanoyl thioester dehydrase (trans-2-decenoyl-ACP isomer...	220.0	[0..2]	[172..1]
FABA_PSEA6 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudoalteromonas atlantica (strain T6c / AT...	219.0	[0..1]	[172..1]
FABA_PSEF5 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC ...	219.0	[0..2]	[172..1]
gi\|15155033, gi\|... - gi\|15887506\|ref\|NP_353187.1\| 3-hydroxydecanoyl-ACP dehydratase [Agrobacterium tumefaciens str. C58],... gi\|25292023 - pir\|\|C97377 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase (beta-hydroxydecanoyl thioester de...	218.0	[0..1]	[171..15]
FABA_THICR - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Thiomicrospira crunogena (strain XCL-2) GN=f...	218.0	[0..2]	[172..1]
FABA_PSEU2 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas syringae pv. syringae (strain B7... tr\|F3G8R0\|F3G8R0... - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas syringae pv. pisi str. 1704B GN=...	217.0	[0..2]	[172..1]
gi\|114772410 - gi\|114772410\|ref\|ZP_01449785.1\| beta-hydroxydecanoyl thioester dehydrase (trans-2-decenoyl-ACP isome... gi\|221134516 - gi\|221134516\|ref\|ZP_03560821.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Glaciecola sp.... gi\|114772410, gi... - gi\|114772410\|ref\|ZP_01449785.1\| beta-hydroxydecanoyl thioester dehydrase (trans-2-decenoyl-ACP isome...	217.0	[0..1]	[172..1]
gi\|91974702, gi\|... - gi\|91974702\|ref\|YP_567361.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Rhodopseudomonas ...	216.0	[0..1]	[171..13]
FABA_PSE14 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas savastanoi pv. phaseolicola (str...	216.0	[0..2]	[172..1]
gi\|95111632 - gi\|95111632\|emb\|CAK16353.1\| beta-hydroxydecanoyl thioester dehydrase (trans-2-decenoyl-ACP isomerase... FABA_PSEE4 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas entomophila (strain L48) GN=fabA...	216.0	[0..2]	[172..1]

Back

Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDKRESYTK EDLLASGRGE LFGAKGPQLP APNMLMMDRV VKMTETGGNF DKGYVEAELD  60
   61 INPDLWFFGC HFIGDPVMPG CLGLDAMWQL VGFYLGWLGG EGKGRALGVG EVKFTGQVLP 120
  121 TAKKVTYRIH FKRIVNRRLI MGLADGEVLV DGRLIYTASD LKVGLFQDTS AF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.30103
Match:	2cf2C
Description:	No description for 2cf2C was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits