YRC Public Data Repository - Protein Structure Prediction

Protein:	UVRB_ECOLI
Organism:	Escherichia coli
Length:	673 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UVRB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75676679, gi\|... - gi\|75676679\|ref\|YP_319100.1\| excinuclease ABC subunit B [Nitrobacter winogradskyi Nb-255], gi\|744215...	698.0	[0..4]	[672..233]
gi\|114537857, gi... - gi\|114706909\|ref\|ZP_01439809.1\| excinuclease ABC subunit B [Fulvimarina pelagi HTCC2506], gi\|1145378...	697.0	[0..4]	[671..182]
UVRB_SHIFL - UvrABC system protein B OS=Shigella flexneri GN=uvrB PE=3 SV=1 gi\|30062264, gi\|... - gi\|30062264\|ref\|NP_836435.1\| excinuclease ABC subunit B [Shigella flexneri 2a str. 2457T], gi\|300405... gi\|24112147, gi\|... - gi\|24112147\|ref\|NP_706657.1\| excinuclease ABC subunit B [Shigella flexneri 2a str. 301], gi\|24050984... UVRB_SHIF8 - UvrABC system protein B OS=Shigella flexneri serotype 5b (strain 8401) GN=uvrB PE=3 SV=1	695.0	[0..1]	[673..1]
gi\|15074835 - gi\|15074835\|emb\|CAC46480.1\| Probable excinuclease ABC subunit B [Sinorhizobium meliloti 1021] gi\|15965654 - gi\|15965654\|ref\|NP_386007.1\| excinuclease ABC subunit B [Sinorhizobium meliloti 1021]	695.0	[0..6]	[672..159]
gi\|86751253, gi\|... - gi\|86751253\|ref\|YP_487749.1\| excinuclease ABC subunit B [Rhodopseudomonas palustris HaA2], gi\|865742...	694.0	[0..4]	[673..232]
gi\|113722670, gi... - gi\|113877851\|ref\|ZP_01417125.1\| probable excinuclease ABC subunit B protein [Sinorhizobium medicae W...	693.0	[0..6]	[672..194]
gi\|154160768, gi... - gi\|89361153\|ref\|ZP_01198969.1\| Excinuclease ABC, B subunit [Xanthobacter autotrophicus Py2], gi\|8935...	693.0	[0..5]	[673..90]
gi\|78693318, gi\|... - gi\|78693318\|ref\|ZP_00857832.1\| Excinuclease ABC, B subunit [Bradyrhizobium sp. BTAi1], gi\|78518873\|g...	693.0	[0..4]	[672..229]
gi\|85058885, gi\|... - gi\|85058885\|ref\|YP_454587.1\| excinuclease ABC subunit B [Sodalis glossinidius str. 'morsitans'], gi\|...	692.0	[0..1]	[673..1]
gi\|90579146, gi\|... - gi\|90579146\|ref\|ZP_01234956.1\| excinuclease ABC subunit B [Vibrio angustum S14], gi\|90439979\|gb\|EAS6...	692.0	[0..1]	[673..1]

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Predicted Domain #1

Region A:
Residues: [1-673]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKPFKLNSA FKPSGDQPEA IRRLEEGLED GLAHQTLLGV TGSGKTFTIA NVIADLQRPT  60
   61 MVLAPNKTLA AQLYGEMKEF FPENAVEYFV SYYDYYQPEA YVPSSDTFIE KDASVNEHIE 120
  121 QMRLSATKAM LERRDVVVVA SVSAIYGLGD PDLYLKMMLH LTVGMIIDQR AILRRLAELQ 180
  181 YARNDQAFQR GTFRVRGEVI DIFPAESDDI ALRVELFDEE VERLSLFDPL TGQIVSTIPR 240
  241 FTIYPKTHYV TPRERIVQAM EEIKEELAAR RKVLLENNKL LEEQRLTQRT QFDLEMMNEL 300
  301 GYCSGIENYS RFLSGRGPGE PPPTLFDYLP ADGLLVVDES HVTIPQIGGM YRGDRARKET 360
  361 LVEYGFRLPS ALDNRPLKFE EFEALAPQTI YVSATPGNYE LEKSGGDVVD QVVRPTGLLD 420
  421 PIIEVRPVAT QVDDLLSEIR QRAAINERVL VTTLTKRMAE DLTEYLEEHG ERVRYLHSDI 480
  481 DTVERMEIIR DLRLGEFDVL VGINLLREGL DMPEVSLVAI LDADKEGFLR SERSLIQTIG 540
  541 RAARNVNGKA ILYGDKITPS MAKAIGETER RREKQQKYNE EHGITPQGLN KKVVDILALG 600
  601 QNIAKTKAKG RGKSRPIVEP DNVPMDMSPK ALQQKIHELE GLMMQHAQNL EFEEAAQIRD 660
  661 QLHQLRELFI AAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2d7dA
Description:	No description for 2d7dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits