YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30039976, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	810 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30039976, gi|....

Description	E-value	Query Range	Subject Range
BAMA_SHIDS - Outer membrane protein assembly factor BamA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=bam...	721.0	[0..1]	[810..1]
gi\|75210500, gi\|... - gi\|75210500\|ref\|ZP_00710651.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Escherichia...	721.0	[0..1]	[810..1]
BAMA_ECOK1 - Outer membrane protein assembly factor BamA OS=Escherichia coli O1:K1 / APEC GN=bamA PE=3 SV=1	721.0	[0..1]	[810..1]
gi\|21307716 - gi\|21307716\|gb\|AAK64508.1\| putative outer membrane protein Vpr [Escherichia coli]	719.0	[0..1]	[810..1]
BAMA_SALPA - Outer membrane protein assembly factor BamA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN... YAET_SALPA - Outer membrane protein assembly factor yaeT OS=Salmonella paratyphi A GN=yaeT PE=3 SV=1 BAMA_SALPK - Outer membrane protein assembly factor BamA OS=Salmonella paratyphi A (strain AKU_12601) GN=bamA PE=...	697.0	[0..1]	[810..1]
gi\|168823253, gi... - gi\|205340481\|gb\|EDZ27245.1\| outer membrane protein assembly complex, YaeT protein [Salmonella enteri... gi\|214000833 - gi\|214000833\|ref\|ZP_03411568.1\| outer membrane protein assembly factor YaeT [Salmonella enterica sub... BAMA_SALTI - Outer membrane protein assembly factor BamA OS=Salmonella typhi GN=bamA PE=3 SV=1 gi\|213646661 - gi\|213646661\|ref\|ZP_03376714.1\| outer membrane protein assembly factor YaeT [Salmonella enterica sub... gi\|213425950 - gi\|213425950\|ref\|ZP_03358700.1\| outer membrane protein assembly factor YaeT [Salmonella enterica sub... gi\|213163131 - gi\|213163131\|ref\|ZP_03348841.1\| outer membrane protein assembly factor YaeT [Salmonella enterica sub... gi\|29136388, gi\|... - gi\|29140764\|ref\|NP_804106.1\| outer membrane protein assembly factor YaeT [Salmonella enterica subsp.... gi\|16759214 - gi\|16759214\|ref\|NP_454831.1\| outer membrane protein assembly factor YaeT [Salmonella enterica subsp.... YAET_SALTI - Outer membrane protein assembly factor yaeT OS=Salmonella typhi GN=yaeT PE=3 SV=1	696.0	[0..1]	[810..1]
YAET_SALCH - Outer membrane protein assembly factor yaeT OS=Salmonella choleraesuis GN=yaeT PE=3 SV=1 BAMA_SALCH - Outer membrane protein assembly factor BamA OS=Salmonella choleraesuis (strain SC-B67) GN=bamA PE=3 ... YAET_SALCH - Outer membrane protein assembly factor yaeT OS=Salmonella choleraesuis GN=yaeT PE=3 SV=1	696.0	[0..1]	[810..1]
gi\|205331366, gi... - gi\|205331366\|gb\|EDZ18130.1\| outer membrane protein assembly complex, YaeT protein [Salmonella enteri... gi\|168263908, gi... - gi\|205347521\|gb\|EDZ34152.1\| outer membrane protein assembly complex, YaeT protein [Salmonella enteri... lcl\|NC_016856.1_... - [gene=yaeT] [protein=outer membrane protein assembly factor YaeT] [protein_id=YP_005235896.1] [locat... BAMA_SALTY - Outer membrane protein assembly factor BamA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC ... YAET_SALTY - Outer membrane protein assembly factor yaeT OS=Salmonella typhimurium GN=yaeT PE=3 SV=1 gi\|197265202, gi... - gi\|197265202\|ref\|ZP_03165276.1\| outer membrane protein assembly complex, YaeT protein [Salmonella en... YAET_SALTY - Outer membrane protein assembly factor yaeT OS=Salmonella typhimurium GN=yaeT PE=3 SV=1	696.0	[0..1]	[810..1]
gi\|45437431, gi\|... - gi\|45442566\|ref\|NP_994105.1\| outer membrane protein assembly factor YaeT [Yersinia pestis biovar Mic... gi\|167050489, gi... - gi\|167399781\|ref\|ZP_02305299.1\| surface antigen/outer membrane protein, OMP85 family [Yersinia pesti... gi\|21960049, gi\|... - gi\|22127003\|ref\|NP_670426.1\| outer membrane protein assembly factor YaeT [Yersinia pestis KIM], gi\|2... gi\|166211785, gi... - gi\|166211785\|ref\|ZP_02237820.1\| surface antigen/outer membrane protein, OMP85 family [Yersinia pesti... gi\|16121352, gi\|... - gi\|218928220\|ref\|YP_002346095.1\| outer membrane protein assembly factor YaeT [Yersinia pestis CO92],... gi\|167055752, gi... - gi\|167425352\|ref\|ZP_02317105.1\| surface antigen/outer membrane protein, OMP85 family [Yersinia pesti... BAMA_YERPS - Outer membrane protein assembly factor BamA OS=Yersinia pseudotuberculosis serotype I (strain IP3295... gi\|166962531, gi... - gi\|167419790\|ref\|ZP_02311543.1\| surface antigen/outer membrane protein, OMP85 family [Yersinia pesti... BAMA_YERPB - Outer membrane protein assembly factor BamA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+... BAMA_YERPY - Outer membrane protein assembly factor BamA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPII... YAET_YERPS - Outer membrane protein assembly factor yaeT OS=Yersinia pseudotuberculosis GN=yaeT PE=3 SV=1 gi\|229837759, gi... - gi\|229837759\|ref\|ZP_04457919.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229704136\|gb\|EEO... gi\|229840981, gi... - gi\|229840981\|ref\|ZP_04461140.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229843082, gi... - gi\|229843082\|ref\|ZP_04463232.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|165912221, gi... - gi\|89105142\|ref\|ZP_01177667.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Yersinia pe... BAMA_YERPA - Outer membrane protein assembly factor BamA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=bamA ... BAMA_YERPN - Outer membrane protein assembly factor BamA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=bamA... gi\|165989161, gi... - gi\|166011895\|ref\|ZP_02232793.1\| surface antigen/outer membrane protein, OMP85 family [Yersinia pesti... gi\|165927078, gi... - gi\|165927078\|ref\|ZP_02222910.1\| surface antigen/outer membrane protein, OMP85 family [Yersinia pesti... gi\|149366947, gi... - gi\|149366947\|ref\|ZP_01888980.1\| putative surface antigen [Yersinia pestis CA88-4125], gi\|149290561\|g... BAMA_YERPG - Outer membrane protein assembly factor BamA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=bamA P... BAMA_YERPP - Outer membrane protein assembly factor BamA OS=Yersinia pestis (strain Pestoides F) GN=bamA PE=3 SV=... BAMA_YERP3 - Outer membrane protein assembly factor BamA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP ... BAMA_YERPE - Outer membrane protein assembly factor BamA OS=Yersinia pestis GN=bamA PE=3 SV=1	676.0	[0..1]	[810..1]
gi\|77957697, gi\|... - gi\|77957697\|ref\|ZP_00821746.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Yersinia be...	676.0	[0..1]	[810..1]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMKKLLIAS LLFSSATVYG AEGFVVKDIH FEGLQRVAVG AALLSMPVRT GDTVNDEDIS  60
   61 NTIRALFATG NFEDVRVLRD GDTLLVQVKE RPTIASITFS GNKSVKDDML KQNLEASGVR 120
  121 VGESLDRTTI ADIEKGLEDF YYSVGKYSAS VKAVVTPLPR NRVDLKLVFQ EGVSAEIQQI 180
  181 NIVGNHAFTT DELISHFQLR DEVPWWNVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.0
Match:	2qczA
Description:	No description for 2qczA was found.

Predicted Domain #2

Region A:
Residues: [210-810]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDRKYQKQKL AGDLETLRSY YLDRGYARFN IDSTQVSLTP DKKGIYVTVN ITEGDQYKLS  60
   61 GVEVSGNLAG HSAEIEQLTK IEPGELYNGT KVTKMEDDIK KLLGRYGYAY PRVQSMPEIN 120
  121 DADKTVKLRV NVDAGNRFYV RKIRFEGNDT SKDAVLRREM RQMEGAWLGS DLVDQGKERL 180
  181 NRLGFFETVD TDTQRVPGSP DQVDVVYKVK ERNTGSFNFG IGYGTESGVS FQAGVQQDNW 240
  241 LGTGYAVGIN GTKNDYQTYA ELSVTNPYFT VDGVSLGGRL FYNDFQADDA DLSDYTNKSY 300
  301 GTDVTLGFPI NEYNSLRAGL GYVHNSLSNM QPQVAMWRYL YSMGEHPSTS DQDNSFKTDD 360
  361 FTFNYGWTYN KLDRGYFPTD GSRVNLTGKV TIPGSDNEYY KVTLDTATYV PIDDDHKWVV 420
  421 LGRTRWGYGD GLGGKEMPFY ENFYAGGSST VRGFQSNTIG PKAVYFPHQA SNYDPDYDYE 480
  481 CATQDGAKDL CKSDDAVGGN AMAVASLEFI TPTPFISDKY ANSVRTSFFW DMGTVWDTNW 540
  541 DSSQYSGYPD YSDPSNIRMS AGIALQWMSP LGPLVFSYAQ PFKKYDGDKA EQFQFNIGKT 600
  601 W

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.30103
Match:	2qdzA
Description:	No description for 2qdzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits