YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15799803, gi\|...
Organism:	Escherichia coli O157:H7 str. EDL933
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15799803, gi|....

Description	E-value	Query Range	Subject Range
gi\|224582006, gi... - gi\|224582006\|ref\|YP_002635804.1\| hypothetical protein SPC_0173 [Salmonella enterica subsp. enterica ... gi\|62178730, gi\|... - gi\|62178730\|ref\|YP_215147.1\| hypothetical protein SC0160 [Salmonella enterica subsp. enterica serova...	210.0	[0..2]	[135..17]
gi\|75230519 - gi\|75230519\|ref\|ZP_00717000.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75189218 - gi\|75189218\|ref\|ZP_00702485.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c...	209.0	[0..1]	[136..1]
gi\|110804180, gi... - gi\|110804180\|ref\|YP_687700.1\| hypothetical protein SFV_0110 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24111562, gi\|... - gi\|24111562\|ref\|NP_706072.1\| hypothetical protein SF0116 [Shigella flexneri 2a str. 301], gi\|2405032... gi\|30061684, gi\|... - gi\|30061684\|ref\|NP_835855.1\| hypothetical protein S0118 [Shigella flexneri 2a str. 2457T], gi\|300399...	208.0	[0..1]	[136..1]
gi\|227838108, gi... - gi\|227884970\|ref\|ZP_04002775.1\| YacL protein [Escherichia coli 83972], gi\|227838108\|gb\|EEJ48574.1\| Y... gi\|26246059, gi\|... - gi\|26246059\|ref\|NP_752098.1\| hypothetical protein c0148 [Escherichia coli CFT073], gi\|26106456\|gb\|AA...	208.0	[0..1]	[136..1]
gi\|22124685, gi\|... - gi\|22124685\|ref\|NP_668108.1\| hypothetical protein y0772 [Yersinia pestis KIM], gi\|21957498\|gb\|AAM843...	188.0	[0..17]	[135..32]
gi\|77976068, gi\|... - gi\|77976068\|ref\|ZP_00831601.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia fred...	184.0	[0..17]	[135..1]
Y717_YERPS - UPF0231 protein YPTB0717 OS=Yersinia pseudotuberculosis GN=YPTB0717 PE=3 SV=1 gi\|161484870 - gi\|161484870\|ref\|NP_668108.2\| hypothetical protein y0772 [Yersinia pestis KIM] Y3414_YERPE - UPF0231 protein YPO3414/y0772/YP_0271 OS=Yersinia pestis GN=YPO3414 PE=3 SV=1 gi\|165991107, gi... - gi\|166010200\|ref\|ZP_02231098.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165922477, gi... - gi\|165925865\|ref\|ZP_02221697.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167398697, gi... - gi\|167398697\|ref\|ZP_02304221.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166204693, gi... - gi\|166214062\|ref\|ZP_02240097.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167423825, gi... - gi\|167423825\|ref\|ZP_02315578.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167420817, gi... - gi\|167420817\|ref\|ZP_02312570.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y717_YERPS - UPF0231 protein YPTB0717 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB0717 PE=3... gi\|45440131, gi\|... - gi\|45440131\|ref\|NP_991670.1\| hypothetical protein YP_0271 [Yersinia pestis biovar Microtus str. 9100... gi\|15981341, gi\|... - gi\|218930431\|ref\|YP_002348306.1\| hypothetical protein YPO3414 [Yersinia pestis CO92], gi\|16123563\|re... gi\|89104444, gi\|... - gi\|89104444\|ref\|ZP_01176987.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|153997543, gi... - gi\|153997543\|ref\|ZP_02022643.1\| hypothetical protein YPE_4002 [Yersinia pestis CA88-4125], gi\|149289... Y2916_YERPA - UPF0231 protein YPA_2916 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_2916 PE=3 SV=1 Y2941_YERPP - UPF0231 protein YPDSF_2941 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_2941 PE=3 SV=1 Y674_YERPN - UPF0231 protein YPN_0674 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_0674 PE=3 SV=1 Y1027_YERPG - UPF0231 protein YpAngola_A1027 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A1027 PE=3... Y747_YERPB - UPF0231 protein YPTS_0747 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_0747 PE=... Y3358_YERP3 - UPF0231 protein YpsIP31758_3358 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... Y3486_YERPY - UPF0231 protein YPK_3486 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_3486 PE=3... gi\|229695420, gi... - gi\|229839054\|ref\|ZP_04459213.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229896533, gi... - gi\|229896533\|ref\|ZP_04511701.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229700607\|gb\|EEO... gi\|229687110, gi... - gi\|229899618\|ref\|ZP_04514759.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]...	183.0	[0..17]	[135..1]
gi\|77957553 - gi\|77957553\|ref\|ZP_00821606.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia berc...	182.0	[0..17]	[136..1]
gi\|77977271 - gi\|77977271\|ref\|ZP_00832724.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia inte...	181.0	[0..17]	[136..1]
gi\|77962128, gi\|... - gi\|77962128\|ref\|ZP_00825953.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia moll...	181.0	[0..17]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQCDFGALP GAEEHTMDYE FLRDITGVVK VRMSMGHEVV GHWFNEEVKE NLALLDEVEQ  60
   61 AAHALKGSER SWQRAGHEYT LWMDGEEVMV RANQLEFAGD EMEEGMNYYD EESLSLCGVE 120
  121 DFLQVVAAYR NFVQQK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	77.221849
Match:	PF06062.2
Description:	No description for PF06062.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.543	N/A	N/A	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.493	N/A	N/A	c.97.1	Cytidine deaminase-like
View	Download	0.470	N/A	N/A	d.20.1	UBC-like
View	Download	0.440	N/A	N/A	d.218.1	Nucleotidyltransferase
View	Download	0.424	N/A	N/A	a.24.11	Bacterial GAP domain
View	Download	0.424	N/A	N/A	a.24.11	Bacterial GAP domain
View	Download	0.420	N/A	N/A	c.97.1	Cytidine deaminase-like
View	Download	0.379	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.364	N/A	N/A	a.39.1	EF-hand
View	Download	0.332	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.307	N/A	N/A	d.77.1	Ribosomal protein L5
View	Download	0.307	N/A	N/A	d.77.1	Ribosomal protein L5
View	Download	0.304	N/A	N/A	a.73.1	Retrovirus capsid protein, N-terminal core domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits