YRC Public Data Repository - Protein Structure Prediction

Protein:	RS20_ECOLI
Organism:	Escherichia coli
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS20_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|68202087, gi\|... - gi\|68230339\|ref\|ZP_00569524.1\| Ribosomal protein S20p [Frankia sp. EAN1pec], gi\|68202087\|gb\|EAN16274...	107.0	[0..2]	[82..92]
gi\|62257754 - gi\|62257754\|gb\|AAX77736.1\| unknown protein [synthetic construct]	101.0	[0..1]	[87..27]
gi\|46912215, gi\|... - gi\|54307792\|ref\|YP_128812.1\| putative ribosomal protein S20 [Photobacterium profundum SS9], gi\|46912...	99.0	[0..1]	[86..12]
gi\|85705686, gi\|... - gi\|85705686\|ref\|ZP_01036783.1\| ribosomal protein S20 [Roseovarius sp. 217], gi\|85669676\|gb\|EAQ24540....	97.0	[0..1]	[87..1]
RS20_ALKEH - 30S ribosomal protein S20 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) G...	96.0	[0..1]	[86..1]
gi\|67985695, gi\|... - gi\|69289459\|ref\|ZP_00618728.1\| Ribosomal protein S20p [Kineococcus radiotolerans SRS30216], gi\|67985...	96.0	[0..2]	[75..46]
gi\|83950591, gi\|... - gi\|83950591\|ref\|ZP_00959324.1\| ribosomal protein S20 [Roseovarius nubinhibens ISM], gi\|83838490\|gb\|E...	96.0	[0..1]	[87..1]
gi\|11360427 - gi\|11360427\|pir\|\|F82559 30S ribosomal protein S20 XF2421 [imported] - Xylella fastidiosa (strain 9a5... gi\|15839012, gi\|... - gi\|9107609\|gb\|AAF85220.1\|AE004051_4 30S ribosomal protein S20 [Xylella fastidiosa 9a5c], gi\|15839012... gi\|71162957, gi\|... - gi\|71276196\|ref\|ZP_00652475.1\| Ribosomal protein S20p [Xylella fastidiosa Dixon], gi\|71162957\|gb\|EAO... gi\|167965481, gi... - gi\|170730688\|ref\|YP_001776121.1\| 30S ribosomal protein S20 [Xylella fastidiosa M12], gi\|167965481\|gb... gi\|71898767, gi\|... - gi\|71900455\|ref\|ZP_00682586.1\| Ribosomal protein S20p [Xylella fastidiosa Ann-1], gi\|71898767\|ref\|ZP...	95.0	[0..2]	[86..22]
gi\|89203486, gi\|... - gi\|89203486\|ref\|ZP_01182144.1\| Ribosomal protein S20p [Bacillus cereus subsp. cytotoxis NVH 391-98],...	95.0	[0..1]	[85..37]
gi\|90416599, gi\|... - gi\|90416599\|ref\|ZP_01224530.1\| 30S ribosomal protein S20 [marine gamma proteobacterium HTCC2207], gi... gi\|90416599\|ref\|... - 30S ribosomal protein S20 [marine gamma proteobacterium HTCC2207]	94.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANIKSAKKR AIQSEKARKH NASRRSMMRT FIKKVYAAIE AGDKAAAQKA FNEMQPIVDR  60
   61 QAAKGLIHKN KAARHKANLT AQINKLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.39794
Match:	1vs5T
Description:	No description for 1vs5T was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.29274818810663	bayes_pls_golite062009
structural molecule activity	8.72221486384695	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: