YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55741500
Organism:	SPECIES UNKNOWN
Length:	61 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55741500.

Description	E-value	Query Range	Subject Range
gi\|109128677 - gi\|109128677\|ref\|XP_001097779.1\| PREDICTED: hypothetical protein [Macaca mulatta]	81.0	[0..1]	[60..163]
gi\|113426454 - gi\|113426454\|ref\|XP_944705.2\| PREDICTED: similar to Metallothionein-2 (MT-2) (Metallothionein-II) (M...	74.0	[0..1]	[61..120]
gi\|114573449 - gi\|114573449\|ref\|XP_001153690.1\| PREDICTED: hypothetical protein [Pan troglodytes]	66.0	[0..1]	[61..296]
MT2B_PIG - Metallothionein-2B OS=Sus scrofa GN=MT2B PE=3 SV=2	66.0	[0..1]	[61..1]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPNCSCAAG GSCTCAGSCK CKECRCTSCK KSCCSCCPVG CAKCAQGCIC KGASDKCSCC  60
   61 A

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Detection Method:	PSI-BLAST
Confidence:	10.045757
Match:	4mt2A
Description:	COMPARISON OF THE NMR SOLUTION STRUCTURE AND THE X-RAY CRYSTAL STRUCTURE OF RAT METALLOTHIONEIN-2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits