YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16767828, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16767828, gi|....

Description	E-value	Query Range	Subject Range
CREA_ECOLI - Protein creA - Escherichia coli EG11217 - putative periplasmic protein / Predicted periplasmic protein, function unknown CREA_SHIFL - Protein CreA OS=Shigella flexneri GN=creA PE=3 SV=1 gi\|24115625, gi\|... - gi\|24115625\|ref\|NP_710135.1\| hypothetical protein SF4429 [Shigella flexneri 2a str. 301], gi\|2405496... CREA_ECOL6 - Protein CreA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=creA PE=3 SV=1 gi\|30043897, gi\|... - gi\|30065633\|ref\|NP_839804.1\| hypothetical protein S4700 [Shigella flexneri 2a str. 2457T], gi\|300438... gi\|227837940, gi... - gi\|227885111\|ref\|ZP_04002916.1\| creA protein [Escherichia coli 83972], gi\|227837940\|gb\|EEJ48406.1\| c... CREA_ECO57 - Protein CreA OS=Escherichia coli O157:H7 GN=creA PE=3 SV=1 gi\|226902045, gi... - gi\|237704133\|ref\|ZP_04534614.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... EG11217 - putative periplasmic protein / Predicted periplasmic protein, function unknown gi\|12519429, gi\|... - gi\|15804968\|ref\|NP_291010.1\| hypothetical protein Z6000 [Escherichia coli O157:H7 EDL933], gi\|125194... gi\|253980383, gi... - gi\|254291074\|ref\|YP_003056824.1\| hypothetical protein ECD_04273 [Escherichia coli BL21(DE3)], gi\|253... gi\|226840515, gi... - gi\|254037409\|ref\|ZP_04871486.1\| creA protein [Escherichia sp. 1_1_43], gi\|226840515\|gb\|EEH72517.1\| c... gi\|238903484, gi... - gi\|238903484\|ref\|YP_002929280.1\| hypothetical protein BWG_4089 [Escherichia coli BW2952], gi\|2388605... gi\|251787645, gi... - gi\|251787645\|ref\|YP_003001949.1\| hypothetical protein B21_04238 [Escherichia coli BL21], gi\|24237991... gi\|215489710, gi... - gi\|215489710\|ref\|YP_002332141.1\| hypothetical protein E2348C_4697 [Escherichia coli O127:H6 str. E23... gi\|217324583, gi... - gi\|217324583\|ref\|ZP_03440667.1\| creA protein [Escherichia coli O157:H7 str. TW14588], gi\|217320804\|g... gi\|218556933, gi... - gi\|218556933\|ref\|YP_002389847.1\| hypothetical protein ECIAI1_4622 [Escherichia coli IAI1], gi\|218363... gi\|218368399, gi... - gi\|218561630\|ref\|YP_002394543.1\| hypothetical protein ECS88_5080 [Escherichia coli S88], gi\|21836839... gi\|208734744, gi... - gi\|208813467\|ref\|ZP_03254796.1\| creA protein [Escherichia coli O157:H7 str. EC4045], gi\|208734744\|gb... gi\|208741020, gi... - gi\|208820897\|ref\|ZP_03261217.1\| creA protein [Escherichia coli O157:H7 str. EC4042], gi\|208741020\|gb... gi\|209160668, gi... - gi\|209399268\|ref\|YP_002273918.1\| creA protein [Escherichia coli O157:H7 str. EC4115], gi\|209160668\|g... gi\|209921864, gi... - gi\|209921864\|ref\|YP_002295948.1\| hypothetical protein ECSE_4673 [Escherichia coli SE11], gi\|20991512... gi\|194412805, gi... - gi\|194429190\|ref\|ZP_03061719.1\| creA protein [Escherichia coli B171], gi\|194412805\|gb\|EDX29098.1\| cr... gi\|194439270, gi... - gi\|194439270\|ref\|ZP_03071349.1\| creA protein [Escherichia coli 101-1], gi\|194421752\|gb\|EDX37760.1\| c... gi\|195937668 - gi\|195937668\|ref\|ZP_03083050.1\| hypothetical protein EscherichcoliO157_14672 [Escherichia coli O157:... gi\|208725442, gi... - gi\|208805641\|ref\|ZP_03247978.1\| creA protein [Escherichia coli O157:H7 str. EC4206], gi\|208725442\|gb... gi\|190902562, gi... - gi\|191167422\|ref\|ZP_03029237.1\| creA protein [Escherichia coli B7A], gi\|190902562\|gb\|EDV62296.1\| cre... gi\|191173197, gi... - gi\|191173197\|ref\|ZP_03034729.1\| creA protein [Escherichia coli F11], gi\|190906582\|gb\|EDV66189.1\| cre... gi\|192926704, gi... - gi\|193065631\|ref\|ZP_03046697.1\| creA protein [Escherichia coli E22], gi\|192926704\|gb\|EDV81332.1\| cre... gi\|193070598, gi... - gi\|193070598\|ref\|ZP_03051536.1\| creA protein [Escherichia coli E110019], gi\|192956081\|gb\|EDV86546.1\|... CREA_ECOL6 - Protein CreA OS=Escherichia coli O6 GN=creA PE=4 SV=1 gi\|218430351, gi... - gi\|218692787\|ref\|YP_002400999.1\| hypothetical protein ECED1_5270 [Escherichia coli ED1a], gi\|2184303... gi\|218698233, gi... - gi\|218698233\|ref\|YP_002405900.1\| hypothetical protein EC55989_5059 [Escherichia coli 55989], gi\|2183... gi\|218373132, gi... - gi\|218703146\|ref\|YP_002410775.1\| hypothetical protein ECIAI39_4930 [Escherichia coli IAI39], gi\|2183... gi\|218708082, gi... - gi\|218708082\|ref\|YP_002415601.1\| hypothetical protein ECUMN_5028 [Escherichia coli UMN026], gi\|21843... gi\|91214115, gi\|... - gi\|91214115\|ref\|YP_544101.1\| hypothetical protein UTI89_C5170 [Escherichia coli UTI89], gi\|91075689\|... gi\|254164323, gi... - gi\|254164323\|ref\|YP_003047433.1\| hypothetical protein ECB_04273 [Escherichia coli B str. REL606], gi... gi\|15834609, gi\|... - gi\|15834609\|ref\|NP_313382.1\| hypothetical protein ECs5355 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254796393, gi... - gi\|254796393\|ref\|YP_003081230.1\| hypothetical protein ECSP_5480 [Escherichia coli O157:H7 str. TW143... gi\|124499256, gi... - gi\|124530365\|ref\|ZP_01701051.1\| CreA family protein [Escherichia coli B], gi\|124499256\|gb\|EAY46748.1... gi\|115515881, gi... - gi\|117626757\|ref\|YP_860080.1\| hypothetical protein APECO1_1982 [Escherichia coli APEC O1], gi\|115515... gi\|110644836, gi... - gi\|110644836\|ref\|YP_672566.1\| hypothetical protein ECP_4783 [Escherichia coli 536], gi\|110346428\|gb\|... gi\|110808185, gi... - gi\|110808185\|ref\|YP_691705.1\| hypothetical protein SFV_4431 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|157163845, gi... - gi\|157163845\|ref\|YP_001461163.1\| hypothetical protein EcHS_A4633 [Escherichia coli HS], gi\|157069525... gi\|157081400, gi... - gi\|157159370\|ref\|YP_001465918.1\| hypothetical protein EcE24377A_4996 [Escherichia coli E24377A], gi\|... gi\|81243797, gi\|... - gi\|82779649\|ref\|YP_405998.1\| hypothetical protein SDY_4658 [Shigella dysenteriae Sd197], gi\|81243797... gi\|170083783, gi... - gi\|170083783\|ref\|YP_001733103.1\| hypothetical protein ECDH10B_4555 [Escherichia coli str. K-12 subst... gi\|82546748, gi\|... - gi\|82546748\|ref\|YP_410695.1\| hypothetical protein SBO_4460 [Shigella boydii Sb227], gi\|81248159\|gb\|A... gi\|170682862, gi... - gi\|170682862\|ref\|YP_001746855.1\| creA protein [Escherichia coli SMS-3-5], gi\|170520580\|gb\|ACB18758.1... gi\|187428944, gi... - gi\|187731952\|ref\|YP_001883061.1\| creA protein [Shigella boydii CDC 3083-94], gi\|187428944\|gb\|ACD0821... gi\|74314831, gi\|... - gi\|74314831\|ref\|YP_313250.1\| hypothetical protein SSON_4547 [Shigella sonnei Ss046], gi\|73858308\|gb\|... gi\|188491472, gi... - gi\|188496273\|ref\|ZP_03003543.1\| creA protein [Escherichia coli 53638], gi\|188491472\|gb\|EDU66575.1\| c... gi\|189000662, gi... - gi\|189000662\|gb\|EDU69648.1\| creA protein [Escherichia coli O157:H7 str. EC4076], gi\|168781689\|ref\|ZP... gi\|168785042, gi... - gi\|189375035\|gb\|EDU93451.1\| creA protein [Escherichia coli O157:H7 str. EC869], gi\|168785042\|ref\|ZP_... gi\|89111105, gi\|... - gi\|89111105\|ref\|AP_004885.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|189379488, gi... - gi\|189379488\|gb\|EDU97904.1\| creA protein [Escherichia coli O157:H7 str. EC508], gi\|168797972\|ref\|ZP_... gi\|169756571, gi... - gi\|170021643\|ref\|YP_001726597.1\| hypothetical protein EcolC_3659 [Escherichia coli ATCC 8739], gi\|16... gi\|168756817, gi... - gi\|189356039\|gb\|EDU74458.1\| creA protein [Escherichia coli O157:H7 str. EC4401], gi\|168756817\|ref\|ZP... gi\|189366957, gi... - gi\|189366957\|gb\|EDU85373.1\| creA protein [Escherichia coli O157:H7 str. EC4501], gi\|168762751\|ref\|ZP... gi\|189364111, gi... - gi\|189364111\|gb\|EDU82530.1\| creA protein [Escherichia coli O157:H7 str. EC4486], gi\|168766681\|ref\|ZP... gi\|168776623, gi... - gi\|187768000\|gb\|EDU31844.1\| creA protein [Escherichia coli O157:H7 str. EC4196], gi\|168776623\|ref\|ZP... gi\|168750964, gi... - gi\|188014935\|gb\|EDU53057.1\| creA protein [Escherichia coli O157:H7 str. EC4113], gi\|168750964\|ref\|ZP...	2.0E-70	[1..157]	[1..157]
gi\|75256308 - gi\|75256308\|ref\|ZP_00727980.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75239539 - gi\|75239539\|ref\|ZP_00723509.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75234559 - gi\|75234559\|ref\|ZP_00718900.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75229456 - gi\|75229456\|ref\|ZP_00716006.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75209600 - gi\|75209600\|ref\|ZP_00709818.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75198211 - gi\|75198211\|ref\|ZP_00708281.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75189105 - gi\|75189105\|ref\|ZP_00702372.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75176002 - gi\|75176002\|ref\|ZP_00696181.1\| COG3045: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|83585304 - gi\|83585304\|ref\|ZP_00923952.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75515588 - gi\|75515588\|ref\|ZP_00737745.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c...	1.0E-69	[14..157]	[1..144]
gi\|62130635, gi\|... - gi\|62183002\|ref\|YP_219419.1\| hypothetical protein SC4432 [Salmonella enterica subsp. enterica serova...	1.0E-69	[1..157]	[1..157]
gi\|238725652, gi... - gi\|77976938\|ref\|ZP_00832403.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia inte...	4.0E-69	[3..155]	[2..155]
gi\|77976168, gi\|... - gi\|77976168\|ref\|ZP_00831701.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia fred...	4.0E-69	[3..155]	[2..155]
gi\|166008669, gi... - gi\|166008669\|ref\|ZP_02229567.1\| creA protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|1659... gi\|165927294, gi... - gi\|165927294\|ref\|ZP_02223126.1\| creA protein [Yersinia pestis biovar Orientalis str. F1991016], gi\|1... gi\|22127596, gi\|... - gi\|22127596\|ref\|NP_671019.1\| hypothetical protein y3722 [Yersinia pestis KIM], gi\|21960704\|gb\|AAM872... gi\|167401531, gi... - gi\|167401531\|ref\|ZP_02307025.1\| creA protein [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|167... gi\|25301064 - pir\|\|AF0056 probable exported protein YPO0457 [imported] - Yersinia pestis (strain CO92) gi\|166211976, gi... - gi\|166211976\|ref\|ZP_02238011.1\| creA protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|166... gi\|51588233, gi\|... - gi\|51594951\|ref\|YP_069142.1\| hypothetical protein YPTB0600 [Yersinia pseudotuberculosis IP 32953], g... gi\|45443458, gi\|... - gi\|45443458\|ref\|NP_994997.1\| hypothetical protein YP_3726 [Yersinia pestis biovar Microtus str. 9100... gi\|16120786, gi\|... - gi\|218927654\|ref\|YP_002345529.1\| hypothetical protein YPO0457 [Yersinia pestis CO92], gi\|16120786\|re... Q66EU1\|Q66EU1_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|167054969, gi... - gi\|167426046\|ref\|ZP_02317799.1\| creA protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|... gi\|162421180, gi... - gi\|77635660\|ref\|ZP_00797742.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|167419269, gi... - gi\|167419269\|ref\|ZP_02311022.1\| creA protein [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|... gi\|77631586, gi\|... - gi\|77631586\|ref\|ZP_00794172.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|170025822, gi... - gi\|170025822\|ref\|YP_001722327.1\| hypothetical protein YPK_3607 [Yersinia pseudotuberculosis YPIII], ... gi\|167468852 - gi\|167468852\|ref\|ZP_02333556.1\| creA protein [Yersinia pestis FV-1] gi\|186893952, gi... - gi\|186893952\|ref\|YP_001871064.1\| hypothetical protein YPTS_0623 [Yersinia pseudotuberculosis PB1/+],... gi\|149289915, gi... - gi\|150260507\|ref\|ZP_01917235.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149289915\|... gi\|229836963, gi... - gi\|229836963\|ref\|ZP_04457128.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229705906\|gb\|EEO... gi\|145212128, gi... - gi\|145600432\|ref\|YP_001164508.1\| hypothetical protein YPDSF_3177 [Yersinia pestis Pestoides F], gi\|1... gi\|229840341, gi... - gi\|229840341\|ref\|ZP_04460500.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229690731, gi... - gi\|229842421\|ref\|ZP_04462576.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|89104420, gi\|... - gi\|89104420\|ref\|ZP_01176964.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|108781951, gi... - gi\|108810038\|ref\|YP_653954.1\| hypothetical protein YPA_4048 [Yersinia pestis Antiqua], gi\|108781951\|... gi\|229900681, gi... - gi\|229900681\|ref\|ZP_04515805.1\| conserved protein [Yersinia pestis Nepal516], gi\|229682020\|gb\|EEO781...	1.0E-68	[3..155]	[2..155]
gi\|238718666, gi... - gi\|77961951\|ref\|ZP_00825779.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia moll...	2.0E-68	[3..155]	[2..152]
gi\|36783991, gi\|... - gi\|37524567\|ref\|NP_927911.1\| hypothetical protein plu0561 [Photorhabdus luminescens subsp. laumondii...	3.0E-68	[1..156]	[2..157]
gi\|77959726 - gi\|77959726\|ref\|ZP_00823743.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia berc...	7.0E-67	[14..156]	[1..143]
gi\|82713649, gi\|... - gi\|82739295\|ref\|ZP_00902103.1\| creA protein [Pseudomonas putida F1], gi\|82713649\|gb\|EAP48755.1\| creA...	2.0E-65	[1..155]	[1..151]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYKSLVLFS ILLLLGQSAR AEQIGSVDTV FKMFGPDHKI VVEAFDDPDV KNVTCYVSRA  60
   61 KTGGIKGGLG LAEDTSDAAI SCQQVGPIEL SDKIKNGKAQ GEVVFKKRTS LIFKSLQVVR 120
  121 FYDEKRNTLA YLAYSDKVVD GSPKNAISAV PVMPWRQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	92.522879
Match:	PF05981.3
Description:	No description for PF05981.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits