YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25513446, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25513446, gi|....

Description	E-value	Query Range	Subject Range
gi\|224586370, gi... - gi\|224586370\|ref\|YP_002640169.1\| hypothetical protein SPC_4684 [Salmonella enterica subsp. enterica ... gi\|195632692, gi... - gi\|195873667\|ref\|ZP_02698441.2\| putative membrane protein [Salmonella enterica subsp. enterica serov... gi\|161367220, gi... - gi\|161617856\|ref\|YP_001591821.1\| hypothetical protein SPAB_05720 [Salmonella enterica subsp. enteric... gi\|62182968, gi\|... - gi\|62182968\|ref\|YP_219385.1\| hypothetical protein SC4398 [Salmonella enterica subsp. enterica serova...	2.0E-83	[1..303]	[12..314]
lcl\|NC_016856.1_... - [gene=yjjP] [protein=hypothetical protein] [protein_id=YP_005240888.1] [location=complement(4817461.... gi\|16767790, gi\|... - gi\|16767790\|ref\|NP_463405.1\| hypothetical protein STM4546 [Salmonella typhimurium LT2], gi\|16423114\|...	5.0E-83	[1..303]	[1..303]
gi\|56130580, gi\|... - gi\|56416323\|ref\|YP_153398.1\| hypothetical protein SPA4360 [Salmonella enterica subsp. enterica serov... gi\|197096723, gi... - gi\|197365246\|ref\|YP_002144883.1\| hypothetical protein SSPA4049 [Salmonella enterica subsp. enterica ...	3.0E-82	[1..303]	[1..303]
gi\|75198181 - gi\|75198181\|ref\|ZP_00708251.1\| COG2966: Uncharacterized conserved protein [Escherichia coli HS]	3.0E-71	[42..303]	[15..274]
gi\|38704263 - gi\|38704263\|ref\|NP_313351.2\| putative structural protein [Escherichia coli O157:H7 str. Sakai] gi\|217324715, gi... - gi\|217324715\|ref\|ZP_03440799.1\| putative membrane protein [Escherichia coli O157:H7 str. TW14588], g... gi\|209162387, gi... - gi\|209400987\|ref\|YP_002273886.1\| hypothetical protein ECH74115_5877 [Escherichia coli O157:H7 str. E... gi\|208821589, gi... - gi\|208821589\|ref\|ZP_03261909.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|208733589, gi... - gi\|208812312\|ref\|ZP_03253641.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|208727629, gi... - gi\|208807828\|ref\|ZP_03250165.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4206], gi... gi\|189379572, gi... - gi\|189405599\|ref\|ZP_02822943.2\| putative membrane protein [Escherichia coli O157:H7 str. EC508], gi\|... gi\|189404644, gi... - gi\|189404644\|ref\|ZP_02810014.2\| putative membrane protein [Escherichia coli O157:H7 str. EC869], gi\|... gi\|189365040, gi... - gi\|189404534\|ref\|ZP_03007494.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4501], gi... gi\|189364318, gi... - gi\|189402858\|ref\|ZP_03006867.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4486], gi... gi\|189000735, gi... - gi\|189010380\|ref\|ZP_03006303.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4076], gi... gi\|187776286, gi... - gi\|187776286\|ref\|ZP_02801665.2\| putative membrane protein [Escherichia coli O157:H7 str. EC4196], gi... gi\|38704263 - gi\|38704263\|ref\|NP_313351.2\| putative structural protein [Escherichia coli O157:H7]	3.0E-71	[42..303]	[15..274]
gi\|1790826, gi\|4... - gi\|49176498\|ref\|NP_418784.3\| putative structural protein [Escherichia coli K12], gb\|AAC77320.1\| puta... gi\|24115593, gi\|... - gi\|24115593\|ref\|NP_710103.1\| putative structural protein [Shigella flexneri 2a str. 301], gi\|2405492... gi\|209749044, gi... - gi\|537207\|gb\|AAA97263.1\| ORF_f277 [Escherichia coli], gi\|209749044\|gb\|ACI72829.1\| putative structura... gi\|537207\|gb\|AAA... - ORF_f277 [Escherichia coli]	4.0E-71	[42..303]	[18..277]
gi\|75189074 - gi\|75189074\|ref\|ZP_00702341.1\| COG2966: Uncharacterized conserved protein [Escherichia coli E24377A]	4.0E-71	[42..303]	[15..274]
gi\|13364802 - gi\|13364802\|dbj\|BAB38747.1\| putative structural protein [Escherichia coli O157:H7 str. Sakai] gi\|25391967, gi\|... - pir\|\|G86135 probable structural protein yjjP [imported] - Escherichia coli (strain O157:H7, substrai... gi\|195937637 - gi\|195937637\|ref\|ZP_03083019.1\| putative structural protein [Escherichia coli O157:H7 str. EC4024] gi\|12519390, gi\|... - gi\|15804938\|ref\|NP_290980.1\| putative structural protein [Escherichia coli O157:H7 EDL933], gi\|12519... gi\|13364802 - gi\|13364802\|dbj\|BAB38747.1\| putative structural protein [Escherichia coli O157:H7]	6.0E-71	[42..303]	[18..277]
gi\|75515556 - gi\|75515556\|ref\|ZP_00737713.1\| COG2966: Uncharacterized conserved protein [Escherichia coli 53638]	1.0E-70	[42..303]	[15..274]
gi\|193066717, gi... - gi\|75255095\|ref\|ZP_00726991.1\| COG2966: Uncharacterized conserved protein [Escherichia coli E22], gi...	2.0E-70	[42..303]	[15..274]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLVVDVFIN KKLILTNAIM PALRVKKKAS VIVAAHRMSF RTGRVMQEEQ SIQRAVTRLC  60
   61 IQCGLLLLQH GAESALVDEL STRLGLALGI DSVESAISSN AIVLTTIKDG QCLTSTRKNQ 120
  121 DRGINMHVVT EVQHIVILAE HRLLDYKGVE KRFSQLRPLR YPRWLVAFMV GLSCSCFCKL 180
  181 NNGGWDGAVI TFFASMIAMY IRQMLAQRHL HPQINFCITA FVATTISGLM LTLPAFSQTP 240
  241 TIA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	71.187087
Match:	PF06738.3
Description:	No description for PF06738.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [244-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASVLLLVP GFPLINSVAD MFKGHINTGL ARWAIASLLT LATCVGVVMS MTIWGLRGWV  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits