YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29140355, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29140355, gi|....

Description	E-value	Query Range	Subject Range
YJGA_SHIDS - UPF0307 protein YjgA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yjgA PE=3 SV=1	4.0E-64	[1..183]	[1..181]
Y3542_YERPS - UPF0307 protein YPTB3542 OS=Yersinia pseudotuberculosis GN=YPTB3542 PE=3 SV=1 Y489_YERPY - UPF0307 protein YPK_0489 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_0489 PE=3... Y3728_YERPB - UPF0307 protein YPTS_3728 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_3728 PE=... Y3542_YERPS - UPF0307 protein YPTB3542 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB3542 PE=3... Y425_YERP3 - UPF0307 protein YpsIP31758_0425 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp...	4.0E-64	[1..182]	[1..181]
gi\|22124092, gi\|... - gi\|22124092\|ref\|NP_667515.1\| hypothetical protein y0172 [Yersinia pestis KIM], gi\|21956842\|gb\|AAM837... gi\|45438453, gi\|... - gi\|45443583\|ref\|NP_995122.1\| hypothetical protein YP_3853 [Yersinia pestis biovar Microtus str. 9100...	5.0E-64	[1..182]	[3..183]
gi\|77958836, gi\|... - gi\|77958836\|ref\|ZP_00822863.1\| COG3028: Uncharacterized protein conserved in bacteria [Yersinia berc...	6.0E-64	[1..182]	[1..181]
Y298_YERPP - UPF0307 protein YPDSF_0298 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_0298 PE=3 SV=1 gi\|167049968, gi... - gi\|167400600\|ref\|ZP_02306109.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166212228, gi... - gi\|166212228\|ref\|ZP_02238263.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167426747, gi... - gi\|167426747\|ref\|ZP_02318500.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167420564, gi... - gi\|167420564\|ref\|ZP_02312317.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y3481_YERPN - UPF0307 protein YPN_3481 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_3481 PE=3 SV=1 gi\|167466803 - gi\|167466803\|ref\|ZP_02331507.1\| hypothetical protein YpesF_02665 [Yersinia pestis FV-1] Y3704_YERPA - UPF0307 protein YPA_3704 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_3704 PE=3 SV=1 gi\|165937496, gi... - gi\|89105409\|ref\|ZP_01177929.1\| COG3028: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|229705786, gi... - gi\|229836843\|ref\|ZP_04457008.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229705786\|gb\|EEO... gi\|229695625, gi... - gi\|229839259\|ref\|ZP_04459418.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229899823, gi... - gi\|229899823\|ref\|ZP_04514964.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|165989748, gi... - gi\|166011364\|ref\|ZP_02232262.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|149289011, gi... - gi\|153997374\|ref\|ZP_02022474.1\| hypothetical protein YPE_3823 [Yersinia pestis CA88-4125], gi\|149289... gi\|165928288, gi... - gi\|165928288\|ref\|ZP_02224120.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|15981609, gi\|... - gi\|218930698\|ref\|YP_002348573.1\| hypothetical protein YPO3691 [Yersinia pestis CO92], gi\|16123830\|re... Y3691_YERPE - UPF0307 protein YPO3691/y0172/YP_3853 OS=Yersinia pestis GN=YPO3691 PE=3 SV=1 Y1170_YERPG - UPF0307 protein YpAngola_A1170 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A1170 PE=3...	1.0E-63	[1..182]	[1..181]
gi\|77973442, gi\|... - gi\|77973442\|ref\|ZP_00828990.1\| COG3028: Uncharacterized protein conserved in bacteria [Yersinia fred...	2.0E-63	[1..182]	[1..181]
gi\|238797947, gi... - gi\|77959993\|ref\|ZP_00823898.1\| COG3028: Uncharacterized protein conserved in bacteria [Yersinia moll...	1.0E-62	[1..182]	[1..181]
YJGA_SALPA - UPF0307 protein YjgA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yjgA PE=3 SV=1 YJGA_SALPA - UPF0307 protein yjgA OS=Salmonella paratyphi A GN=yjgA PE=3 SV=1 YJGA_SALPK - UPF0307 protein YjgA OS=Salmonella paratyphi A (strain AKU_12601) GN=yjgA PE=3 SV=1	3.0E-62	[1..183]	[1..183]
gi\|238726983, gi... - gi\|77978735\|ref\|ZP_00834160.1\| COG3028: Uncharacterized protein conserved in bacteria [Yersinia inte...	3.0E-62	[1..182]	[1..181]
YJGA_SHIF8 - UPF0307 protein YjgA OS=Shigella flexneri serotype 5b (strain 8401) GN=yjgA PE=3 SV=1 gi\|30043742, gi\|... - gi\|30065478\|ref\|NP_839649.1\| hypothetical protein S4518 [Shigella flexneri 2a str. 2457T], gi\|300437...	4.0E-62	[1..183]	[1..183]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKQPEDWLD DVPGDDIEDE DDEIIWVSKS EIKRDAEELK RLGAELVDLG KNALDKIPLD  60
   61 ADLRDAIELA QRIKMEGRRR QLQLIGKMLR QRDVEPIRQA LDKLKNRHNQ QVVLFHKLEH 120
  121 LRDRLIVEGD DAVAEVLTLW PHADRQQLRS LIRNAKKEKE GNKPPKSARQ IFQYLRELAE 180
  181 NEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.30103
Match:	2p0tA
Description:	No description for 2p0tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits