YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16763196
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16763196.

Description	E-value	Query Range	Subject Range
gi\|237703857, gi... - gi\|237703857\|ref\|ZP_04534338.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|73858147, gi\|... - gi\|74314670\|ref\|YP_313089.1\| hypothetical protein SSON_4371 [Shigella sonnei Ss046], gi\|73858147\|gb\|... gi\|82779389, gi\|... - gi\|82779389\|ref\|YP_405738.1\| hypothetical protein SDY_4358 [Shigella dysenteriae Sd197], gi\|81243537... gi\|13364642 - gi\|13364642\|dbj\|BAB38588.1\| hypothetical protein [Escherichia coli O157:H7] gi\|13364642 - gi\|13364642\|dbj\|BAB38588.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|209750120, gi... - pir\|\|E86115 hypothetical protein yjfO [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|91213738, gi\|... - gi\|91213738\|ref\|YP_543724.1\| hypothetical protein UTI89_C4789 [Escherichia coli UTI89], gi\|91075312\|... gi\|26251084, gi\|... - gi\|26251084\|ref\|NP_757124.1\| Hypothetical lipoprotein yjfO precursor [Escherichia coli CFT073], gi\|2... gi\|24054874, gi\|... - gi\|24115544\|ref\|NP_710054.1\| hypothetical protein SF4344 [Shigella flexneri 2a str. 301], gi\|2405487... gi\|15804778, gi\|... - gi\|15804778\|ref\|NP_290819.1\| hypothetical protein Z5796 [Escherichia coli O157:H7 EDL933], gi\|125191... gi\|30065560, gi\|... - gi\|30065560\|ref\|NP_839731.1\| hypothetical protein S4614 [Shigella flexneri 2a str. 2457T], gi\|300438... gi\|110346138, gi... - gi\|110644546\|ref\|YP_672276.1\| hypothetical protein ECP_4434 [Escherichia coli 536], gi\|110346138\|gb\|... gi\|110617652, gi... - gi\|110808104\|ref\|YP_691624.1\| hypothetical protein SFV_4345 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|117626535, gi... - gi\|117626535\|ref\|YP_859858.1\| hypothetical protein APECO1_2203 [Escherichia coli APEC O1], gi\|115515...	1.0E-49	[1..109]	[34..142]
gi\|160866468, gi... - gi\|161505121\|ref\|YP_001572233.1\| hypothetical protein SARI_03255 [Salmonella enterica subsp. arizona... gi\|205274915, gi... - gi\|205355134\|ref\|YP_002228935.1\| hypothetical protein SG4221 [Salmonella enterica subsp. enterica se... gi\|16767625, gi\|... - gi\|16767625\|ref\|NP_463240.1\| putative lipoprotein [Salmonella typhimurium LT2], gi\|16422940\|gb\|AAL23... lcl\|NC_016856.1_... - [gene=yjfO] [protein=putative lipoprotein] [protein_id=YP_005240692.1] [location=complement(4634517....	2.0E-49	[1..109]	[1..109]
gi\|81247980, gi\|... - gi\|82546569\|ref\|YP_410516.1\| hypothetical protein SBO_4266 [Shigella boydii Sb227], gi\|81247980\|gb\|A... gi\|157163654, gi... - gi\|157163654\|ref\|YP_001460972.1\| hypothetical protein EcHS_A4433 [Escherichia coli HS], gi\|157069334... gi\|157158116, gi... - gi\|157158116\|ref\|YP_001465689.1\| hypothetical protein EcE24377A_4749 [Escherichia coli E24377A], gi\|... gi\|187731161, gi... - gi\|187731161\|ref\|YP_001882878.1\| hypothetical protein SbBS512_E4719 [Shigella boydii CDC 3083-94], g...	4.0E-49	[1..109]	[34..142]
gi\|218372872, gi... - gi\|218702886\|ref\|YP_002410515.1\| hypothetical protein ECIAI39_4654 [Escherichia coli IAI39], gi\|2183... gi\|38704242 - gi\|38704242\|ref\|NP_313192.2\| hypothetical protein ECs5165 [Escherichia coli O157:H7 str. Sakai] gi\|218354671, gi... - gi\|218697939\|ref\|YP_002405606.1\| hypothetical protein EC55989_4746 [Escherichia coli 55989], gi\|2183... gi\|218430086, gi... - gi\|218692522\|ref\|YP_002400734.1\| hypothetical protein ECED1_4976 [Escherichia coli ED1a], gi\|2184300... gi\|218561348, gi... - gi\|218561348\|ref\|YP_002394261.1\| hypothetical protein ECS88_4775 [Escherichia coli S88], gi\|21836811... gi\|217325452, gi... - gi\|217325452\|ref\|ZP_03441536.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|215267605, gi... - gi\|215489533\|ref\|YP_002331964.1\| hypothetical protein E2348C_4512 [Escherichia coli O127:H6 str. E23... gi\|209914937, gi... - gi\|209921678\|ref\|YP_002295762.1\| hypothetical protein ECSE_4487 [Escherichia coli SE11], gi\|20991493... gi\|191170782, gi... - gi\|191170782\|ref\|ZP_03032334.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190909006\|... gi\|170520443, gi... - gi\|170682725\|ref\|YP_001746584.1\| hypothetical protein EcSMS35_4660 [Escherichia coli SMS-3-5], gi\|17... gi\|168801844, gi... - gi\|189376063\|gb\|EDU94479.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|189375113, gi... - gi\|189375113\|gb\|EDU93529.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168760431, gi... - gi\|189368911\|gb\|EDU87327.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|161986381 - gi\|161986381\|ref\|YP_313089.2\| hypothetical protein SSON_4371 [Shigella sonnei Ss046] gi\|161949989 - gi\|161949989\|ref\|YP_405738.2\| hypothetical protein SDY_4358 [Shigella dysenteriae Sd197] gi\|161486367 - gi\|161486367\|ref\|NP_839731.2\| hypothetical protein S4614 [Shigella flexneri 2a str. 2457T] gi\|161486012 - gi\|161486012\|ref\|NP_757124.2\| hypothetical protein c5277 [Escherichia coli CFT073] gi\|161485843 - gi\|161485843\|ref\|NP_710054.2\| hypothetical protein SF4344 [Shigella flexneri 2a str. 301] gi\|161367455 - gi\|161367455\|ref\|NP_290819.2\| hypothetical protein Z5796 [Escherichia coli O157:H7 EDL933] gi\|38704242 - gi\|38704242\|ref\|NP_313192.2\| hypothetical protein ECs5165 [Escherichia coli O157:H7]	4.0E-48	[1..109]	[1..109]
gi\|218363510, gi... - gi\|218556741\|ref\|YP_002389655.1\| hypothetical protein ECIAI1_4422 [Escherichia coli IAI1], gi\|218363... gi\|194426670, gi... - gi\|194426670\|ref\|ZP_03059224.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194415409... gi\|193066019, gi... - gi\|193066019\|ref\|ZP_03047077.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192926342\|... gi\|190904303, gi... - gi\|191165608\|ref\|ZP_03027448.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190904303\|... gi\|161984791 - gi\|161984791\|ref\|YP_410516.2\| hypothetical protein SBO_4266 [Shigella boydii Sb227] gi\|75188900 - gi\|75188900\|ref\|ZP_00702167.1\| hypothetical protein EcolE_01002177 [Escherichia coli E24377A]	1.0E-47	[1..109]	[1..109]
gi\|62182823, gi\|... - gi\|62182823\|ref\|YP_219240.1\| hypothetical protein SC4253 [Salmonella enterica subsp. enterica serova... gi\|56416170, gi\|... - gi\|56416170\|ref\|YP_153245.1\| hypothetical protein SPA4196 [Salmonella enterica subsp. enterica serov... gi\|224586218, gi... - gi\|224586218\|ref\|YP_002640017.1\| hypothetical protein SPC_4526 [Salmonella enterica subsp. enterica ... gi\|197096570, gi... - gi\|197365093\|ref\|YP_002144730.1\| hypothetical protein SSPA3896 [Salmonella enterica subsp. enterica ... gi\|161617650, gi... - gi\|161617650\|ref\|YP_001591615.1\| hypothetical protein SPAB_05513 [Salmonella enterica subsp. enteric...	5.0E-46	[1..109]	[1..109]
gi\|254037209, gi... - gi\|254037209\|ref\|ZP_04871286.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684031... gi\|1790633, gi\|4... - gi\|49176470\|ref\|NP_418610.3\| hypothetical protein b4189 [Escherichia coli K12], gb\|AAC77146.1\| orf, ... gi\|1361049, gi\|5... - gi\|537030\|gb\|AAA97085.1\| ORF_f142 [Escherichia coli], gi\|1361049\|pir\|\|S56414 hypothetical 16K protei... gi\|537030\|gb\|AAA... - ORF_f142 [Escherichia coli] gi\|188491004, gi... - gi\|188495805\|ref\|ZP_03003075.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18849100...	2.0E-45	[1..109]	[34..142]
gi\|194421519, gi... - gi\|194439520\|ref\|ZP_03071594.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442151... EG12489 - bioflm peroxide resistance protein / Confers peroxide resistance in bioflms, YhcN family; mutants ar... gi\|169891470, gi... - gi\|170083635\|ref\|YP_001732955.1\| hypothetical protein ECDH10B_4384 [Escherichia coli str. K-12 subst... YJFO_ECOLI - UPF0379 lipoprotein yjfO precursor - Escherichia coli gi\|89110909, gi\|... - gi\|89110909\|ref\|AP_004689.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|238903296, gi... - gi\|238903296\|ref\|YP_002929092.1\| hypothetical protein BWG_3901 [Escherichia coli BW2952], gi\|2388604... gi\|75515426 - gi\|75515426\|ref\|ZP_00737583.1\| hypothetical protein Ecol5_01000529 [Escherichia coli 53638] gi\|242379710, gi... - gi\|251787437\|ref\|YP_003001741.1\| hypothetical protein B21_04018 [Escherichia coli BL21], gi\|24237971... gi\|253980175, gi... - gi\|254290868\|ref\|YP_003056616.1\| hypothetical protein ECD_04056 [Escherichia coli BL21(DE3)], gi\|253... gi\|253976019, gi... - gi\|254164118\|ref\|YP_003047226.1\| hypothetical protein ECB_04056 [Escherichia coli B str. REL606], gi... EG12489 - bioflm peroxide resistance protein / Confers peroxide resistance in bioflms, YhcN family; mutants ar...	3.0E-44	[1..109]	[1..109]
gi\|193070865, gi... - gi\|75234262\|ref\|ZP_00718650.1\| hypothetical protein EcolE1_01003812 [Escherichia coli E110019], gi\|1... gi\|170021801, gi... - gi\|170021801\|ref\|YP_001726755.1\| hypothetical protein EcolC_3824 [Escherichia coli ATCC 8739], gi\|16...	1.0E-43	[1..109]	[1..109]
gi\|229903926, gi... - gi\|229903926\|ref\|ZP_04519039.1\| conserved protein [Yersinia pestis Nepal516], gi\|229679696\|gb\|EEO757... gi\|51594787, gi\|... - gi\|51594787\|ref\|YP_068978.1\| putative lipoprotein [Yersinia pseudotuberculosis IP 32953], gi\|5158806... gi\|25509646 - pir\|\|AG0047 probable lipoprotein YPO0384 [imported] - Yersinia pestis (strain CO92) gi\|229706329, gi... - gi\|229836645\|ref\|ZP_04456811.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229706329\|gb\|EEO... gi\|229696623, gi... - gi\|229840257\|ref\|ZP_04460416.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|15978481, gi\|... - gi\|218927586\|ref\|YP_002345461.1\| putative lipoprotein [Yersinia pestis CO92], gi\|16120718\|ref\|NP_404... gi\|229842335, gi... - gi\|229842335\|ref\|ZP_04462490.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|167467836 - gi\|167467836\|ref\|ZP_02332540.1\| hypothetical protein YpesF_08044 [Yersinia pestis FV-1] gi\|167057859, gi... - gi\|167423689\|ref\|ZP_02315442.1\| putative lipoprotein [Yersinia pestis biovar Mediaevalis str. K19730... gi\|186893796, gi... - gi\|186893796\|ref\|YP_001870908.1\| hypothetical protein YPTS_0465 [Yersinia pseudotuberculosis PB1/+],... gi\|169752536, gi... - gi\|170026002\|ref\|YP_001722507.1\| hypothetical protein YPK_3787 [Yersinia pseudotuberculosis YPIII], ... gi\|150260573, gi... - gi\|150260573\|ref\|ZP_01917301.1\| putative lipoprotein [Yersinia pestis CA88-4125], gi\|149289981\|gb\|ED... gi\|145600838, gi... - gi\|145600838\|ref\|YP_001164914.1\| lipoprotein [Yersinia pestis Pestoides F], gi\|145212534\|gb\|ABP41941... Q66FA5\|Q66FA5_YERPS - Putative lipoprotein precursor - Yersinia pseudotuberculosis gi\|161511443 - gi\|161511443\|ref\|NP_991932.2\| hypothetical protein YP_0539 [Yersinia pestis biovar Microtus str. 910... gi\|108781804, gi... - gi\|108809891\|ref\|YP_653807.1\| putative lipoprotein [Yersinia pestis Antiqua], gi\|108781804\|gb\|ABG158... gi\|161484879 - gi\|161484879\|ref\|NP_667977.2\| hypothetical protein y0640 [Yersinia pestis KIM] gi\|166204808, gi... - gi\|166214013\|ref\|ZP_02240048.1\| putative lipoprotein [Yersinia pestis biovar Antiqua str. B42003004]... gi\|77631434, gi\|... - gi\|77631434\|ref\|ZP_00794020.1\| hypothetical protein YpseI_01002818 [Yersinia pseudotuberculosis IP 3... gi\|165926802, gi... - gi\|165926802\|ref\|ZP_02222634.1\| putative lipoprotein [Yersinia pestis biovar Orientalis str. F199101... gi\|167418981, gi... - gi\|167418981\|ref\|ZP_02310734.1\| putative lipoprotein [Yersinia pestis biovar Orientalis str. MG05-10... gi\|167049903, gi... - gi\|167400535\|ref\|ZP_02306044.1\| putative lipoprotein [Yersinia pestis biovar Antiqua str. UG05-0454]...	3.0E-43	[9..108]	[4..103]

Back

Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIRKRDRVM RRFAPLIAAL LLSACSMLQG TPQPAPPVAD HPQEIRRDQT QGLQRMGTVS  60
   61 ALVRGSPDDA IDEIRAKAAA AKADYYVILM VDETVVTGQW YSQAILYRQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.14
Match:	2nocA
Description:	No description for 2nocA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits