YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25512862, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25512862, gi|....

Description	E-value	Query Range	Subject Range
gi\|115515654, gi... - gi\|117626530\|ref\|YP_859853.1\| hypothetical protein APECO1_2208 [Escherichia coli APEC O1], gi\|115515...	1.0E-36	[1..132]	[28..159]
gi\|207859519, gi... - gi\|207859519\|ref\|YP_002246170.1\| hypothetical protein SEN4140 [Salmonella enterica subsp. enterica s... gi\|197939971, gi... - gi\|198245455\|ref\|YP_002218257.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica se... gi\|200388308, gi... - gi\|200388308\|ref\|ZP_03214920.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica ser... gi\|197263344, gi... - gi\|197263344\|ref\|ZP_03163418.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica ser... gi\|197365089, gi... - gi\|197365089\|ref\|YP_002144726.1\| hypothetical protein SSPA3890 [Salmonella enterica subsp. enterica ... gi\|194446450, gi... - gi\|194446450\|ref\|YP_002043628.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica se... gi\|194408494, gi... - gi\|194450190\|ref\|YP_002048416.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica se... gi\|205347877, gi... - gi\|205347877\|gb\|EDZ34508.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica serovar... gi\|168464742, gi... - gi\|195632878\|gb\|EDX51332.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica serovar... gi\|205327238, gi... - gi\|205327238\|gb\|EDZ14002.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica serovar... gi\|168245162, gi... - gi\|205336064\|gb\|EDZ22828.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica serovar... gi\|161617645, gi... - gi\|161617645\|ref\|YP_001591610.1\| hypothetical protein SPAB_05508 [Salmonella enterica subsp. enteric... gi\|167553778, gi... - gi\|205321869\|gb\|EDZ09708.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica serovar... gi\|16422935, gi\|... - gi\|16767620\|ref\|NP_463235.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164229... lcl\|NC_016856.1_... - [gene=yjfL] [protein=putative inner membrane protein] [protein_id=YP_005240687.1] [location=4630147.... gi\|56130422, gi\|... - gi\|56416165\|ref\|YP_153240.1\| hypothetical protein SPA4191 [Salmonella enterica subsp. enterica serov...	6.0E-36	[1..132]	[1..132]
gi\|62182819, gi\|... - gi\|62182819\|ref\|YP_219236.1\| putative inner membrane protein [Salmonella enterica subsp. enterica se... gi\|224586213, gi... - gi\|224586213\|ref\|YP_002640012.1\| hypothetical protein SPC_4521 [Salmonella enterica subsp. enterica ... gi\|197251282, gi... - gi\|197251282\|ref\|YP_002149287.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica se... gi\|238910532 - gi\|238910532\|ref\|ZP_04654369.1\| hypothetical protein SentesTe_05268 [Salmonella enterica subsp. ente... gi\|194458832, gi... - gi\|194472468\|ref\|ZP_03078452.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica ser... gi\|168822497, gi... - gi\|205341065\|gb\|EDZ27829.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica serovar... gi\|205334264, gi... - gi\|205334264\|gb\|EDZ21028.1\| inner membrane protein YjfL [Salmonella enterica subsp. enterica serovar...	7.0E-36	[1..132]	[1..132]
YJFL_ECO57 - UPF0719 inner membrane protein YjfL OS=Escherichia coli O157:H7 GN=yjfL PE=3 SV=1 gi\|168801839, gi... - gi\|189376059\|gb\|EDU94475.1\| putative inner membrane protein [Escherichia coli O157:H7 str. EC508], g... EG12487 - UPF0719 family inner membrane protein / Inner membrane protein, UPF0719 family, function unknown EG12487 - UPF0719 family inner membrane protein / Inner membrane protein, UPF0719 family, function unknown gi\|168784821, gi... - gi\|189374934\|gb\|EDU93350.1\| putative inner membrane protein [Escherichia coli O157:H7 str. EC869], g... gi\|12519172, gi\|... - gi\|15804773\|ref\|NP_290814.1\| hypothetical protein Z5791 [Escherichia coli O157:H7 EDL933], gi\|125191... gi\|169891465, gi... - gi\|170083630\|ref\|YP_001732950.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|170021806, gi... - gi\|170021806\|ref\|YP_001726760.1\| hypothetical protein EcolC_3829 [Escherichia coli ATCC 8739], gi\|16... gi\|195935974 - gi\|195935974\|ref\|ZP_03081356.1\| inner membrane protein [Escherichia coli O157:H7 str. EC4024] gi\|170681229, gi... - gi\|170681229\|ref\|YP_001746579.1\| putative inner membrane protein [Escherichia coli SMS-3-5], gi\|1705... gi\|124528243, gi... - gi\|124528243\|ref\|ZP_01699567.1\| protein of unknown function DUF350 [Escherichia coli B], gi\|12450068... gi\|208814405, gi... - gi\|208814405\|ref\|ZP_03255734.1\| putative inner membrane protein [Escherichia coli O157:H7 str. EC404... gi\|208728402, gi... - gi\|208808601\|ref\|ZP_03250938.1\| putative inner membrane protein [Escherichia coli O157:H7 str. EC420... gi\|168754755, gi... - gi\|189357824\|gb\|EDU76243.1\| putative inner membrane protein [Escherichia coli O157:H7 str. EC4401], ... gi\|168751464, gi... - gi\|188014488\|gb\|EDU52610.1\| putative inner membrane protein [Escherichia coli O157:H7 str. EC4113], ... gi\|189364326, gi... - gi\|189364326\|gb\|EDU82745.1\| putative inner membrane protein [Escherichia coli O157:H7 str. EC4486], ... gi\|189369016, gi... - gi\|189369016\|gb\|EDU87432.1\| putative inner membrane protein [Escherichia coli O157:H7 str. EC4501], ... gi\|168780616, gi... - gi\|189001766\|gb\|EDU70752.1\| putative inner membrane protein [Escherichia coli O157:H7 str. EC4076], ... gi\|168774103, gi... - gi\|187770327\|gb\|EDU34171.1\| putative inner membrane protein [Escherichia coli O157:H7 str. EC4196], ... gi\|192955824, gi... - gi\|75234267\|ref\|ZP_00718655.1\| COG3766: Predicted membrane protein [Escherichia coli E110019], gi\|19... gi\|75255911, gi\|... - gi\|75255911\|ref\|ZP_00727643.1\| COG3766: Predicted membrane protein [Escherichia coli E22], gi\|193065... gi\|85676935, gi\|... - gi\|89110904\|ref\|AP_004684.1\| conserved inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|209157458, gi... - gi\|209396058\|ref\|YP_002273726.1\| putative inner membrane protein [Escherichia coli O157:H7 str. EC41... gi\|208739843, gi... - gi\|208819720\|ref\|ZP_03260040.1\| putative inner membrane protein [Escherichia coli O157:H7 str. EC404... gi\|218556736, gi... - gi\|218556736\|ref\|YP_002389650.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|194439523, gi... - gi\|83585078\|ref\|ZP_00923731.1\| COG3766: Predicted membrane protein [Escherichia coli 101-1], gi\|1944... gi\|217321548, gi... - gi\|217325327\|ref\|ZP_03441411.1\| putative inner membrane protein [Escherichia coli O157:H7 str. TW145... gi\|157156318, gi... - gi\|75188895\|ref\|ZP_00702162.1\| COG3766: Predicted membrane protein [Escherichia coli E24377A], gi\|15... gi\|218702881, gi... - gi\|218702881\|ref\|YP_002410510.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|157163649, gi... - gi\|75198030\|ref\|ZP_00708100.1\| COG3766: Predicted membrane protein [Escherichia coli HS], gi\|1571636... gi\|218697933, gi... - gi\|218697933\|ref\|YP_002405600.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|194426585, gi... - gi\|75212264\|ref\|ZP_00712304.1\| COG3766: Predicted membrane protein [Escherichia coli B171], gi\|19442... gi\|191165584, gi... - gi\|75231223\|ref\|ZP_00717630.1\| COG3766: Predicted membrane protein [Escherichia coli B7A], gi\|191165... gi\|218707795, gi... - gi\|218707795\|ref\|YP_002415314.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|13364637, gi\|... - gi\|15834414\|ref\|NP_313187.1\| hypothetical protein ECs5160 [Escherichia coli O157:H7 str. Sakai], gi\|... YJFL_ECOLI - Inner membrane protein yjfL - Escherichia coli gi\|238903291, gi... - gi\|238903291\|ref\|YP_002929087.1\| conserved inner membrane protein [Escherichia coli BW2952], gi\|2388... gi\|251787433, gi... - gi\|251787433\|ref\|YP_003001737.1\| hypothetical protein B21_04013 [Escherichia coli BL21], gi\|24237970... gi\|254290863, gi... - gi\|254290863\|ref\|YP_003056611.1\| conserved inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|226840308, gi... - gi\|254037202\|ref\|ZP_04871279.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684030... gi\|254164113, gi... - gi\|254164113\|ref\|YP_003047221.1\| conserved inner membrane protein [Escherichia coli B str. REL606], ... gi\|254796203, gi... - gi\|254796203\|ref\|YP_003081040.1\| conserved inner membrane protein [Escherichia coli O157:H7 str. TW1...	2.0E-34	[1..132]	[1..132]
gi\|227836346, gi... - gi\|227886773\|ref\|ZP_04004578.1\| inner membrane protein [Escherichia coli 83972], gi\|227836346\|gb\|EEJ... gi\|226901763, gi... - gi\|237703851\|ref\|ZP_04534332.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|215489528, gi... - gi\|215489528\|ref\|YP_002331959.1\| conserved inner membrane protein [Escherichia coli O127:H6 str. E23... gi\|218368112, gi... - gi\|218561343\|ref\|YP_002394256.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218692518, gi... - gi\|218692518\|ref\|YP_002400730.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|91075307, gi\|... - gi\|91213733\|ref\|YP_543719.1\| hypothetical protein UTI89_C4784 [Escherichia coli UTI89], gi\|91075307\|... gi\|110644541, gi... - gi\|110644541\|ref\|YP_672271.1\| putative membrane protein YjfL [Escherichia coli 536], gi\|110346133\|gb...	3.0E-34	[1..132]	[1..132]
gi\|81247985, gi\|... - gi\|82546574\|ref\|YP_410521.1\| hypothetical protein SBO_4271 [Shigella boydii Sb227], gi\|81247985\|gb\|A... gi\|187730281, gi... - gi\|75179447\|ref\|ZP_00699451.1\| COG3766: Predicted membrane protein [Shigella boydii BS512], gi\|18773...	3.0E-34	[1..132]	[1..132]
gi\|190909088, gi... - gi\|75242426\|ref\|ZP_00726188.1\| COG3766: Predicted membrane protein [Escherichia coli F11], gi\|191170...	6.0E-34	[1..132]	[1..132]
gi\|49613067, gi\|... - gi\|50122541\|ref\|YP_051708.1\| hypothetical protein ECA3620 [Pectobacterium atrosepticum SCRI1043], gi...	3.0E-31	[1..132]	[1..132]
gi\|28806052, gi\|... - gi\|28897839\|ref\|NP_797444.1\| hypothetical protein VP1065 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28806052 - gi\|28806052\|dbj\|BAC59328.1\| putative membrane protein [Vibrio parahaemolyticus RIMD 2210633]	3.0E-31	[2..132]	[6..138]
gi\|75854157, gi\|... - gi\|75854157\|ref\|ZP_00761869.1\| COG3766: Predicted membrane protein [Vibrio sp. Ex25], gi\|116184089\|r...	4.0E-31	[3..132]	[7..138]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHILDALLAF CAYFFIGAAM IIVFLFIYSK ITPHNEWQLI KNNNTAASLA FSGTLLGYVI  60
   61 PLSSAAINSV SIPDYFAWGG IAL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.79588
Match:	PF03994.5
Description:	No description for PF03994.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VIQLLIYGCV RLYMPTLSEK IIHHNVAAGL FMGTAALAGG IFNAACMTW

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	15.481486
Match:	PF03994.5
Description:	No description for PF03994.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits