YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29140293, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	515 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29140293, gi|....

Description	E-value	Query Range	Subject Range
gi\|81248004, gi\|... - gi\|82546593\|ref\|YP_410539.1\| hypothetical protein SBO_4290 [Shigella boydii Sb227], gi\|81248004\|gb\|A...	0.0	[1..514]	[1..514]
gi\|110617632, gi... - gi\|110808084\|ref\|YP_691605.1\| hypothetical protein SFV_4324 [Shigella flexneri 5 str. 8401], gi\|1106...	0.0	[1..514]	[1..514]
gi\|75179462, gi\|... - gi\|75179462\|ref\|ZP_00699466.1\| COG0063: Predicted sugar kinase [Shigella boydii BS512], gi\|187733105...	0.0	[1..514]	[1..514]
gi\|238903274, gi... - gi\|238903274\|ref\|YP_002929070.1\| putative carbohydrate kinase [Escherichia coli BW2952], gi\|23886218... gi\|218363488, gi... - gi\|218556719\|ref\|YP_002389633.1\| hypothetical protein ECIAI1_4400 [Escherichia coli IAI1], gi\|218363... EG11758 - bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehy... gi\|254037180, gi... - gi\|254037180\|ref\|ZP_04871257.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684028... YJEF_ECOLI - Hypothetical protein yjeF - Escherichia coli gi\|170083613, gi... - gi\|170083613\|ref\|YP_001732933.1\| carbohydrate kinase [Escherichia coli str. K-12 substr. DH10B], gi\|... EG11758 - bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehy... gi\|89110887, gi\|... - gi\|89110887\|ref\|AP_004667.1\| predicted carbohydrate kinase [Escherichia coli str. K-12 substr. W3110...	0.0	[1..514]	[1..514]
gi\|91213716, gi\|... - gi\|91213716\|ref\|YP_543702.1\| hypothetical protein UTI89_C4767 [Escherichia coli UTI89], gi\|91075290\|... gi\|26111491, gi\|... - gi\|26251059\|ref\|NP_757099.1\| hypothetical protein c5251 [Escherichia coli CFT073], gi\|26111491\|gb\|AA... gi\|226901745, gi... - gi\|237703833\|ref\|ZP_04534314.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|218430065, gi... - gi\|218692501\|ref\|YP_002400713.1\| hypothetical protein ECED1_4952 [Escherichia coli ED1a], gi\|2184300...	0.0	[1..514]	[8..521]
gi\|73858128, gi\|... - gi\|74314651\|ref\|YP_313071.1\| hypothetical protein SSON_4351 [Shigella sonnei Ss046], gi\|73858128\|gb\|...	0.0	[1..514]	[1..514]
gi\|218561326, gi... - gi\|218561326\|ref\|YP_002394239.1\| hypothetical protein ECS88_4753 [Escherichia coli S88], gi\|21836809... gi\|227836363, gi... - gi\|227886790\|ref\|ZP_04004595.1\| possible sugar kinase [Escherichia coli 83972], gi\|227836363\|gb\|EEJ4... gi\|110346116, gi... - gi\|110644524\|ref\|YP_672254.1\| hypothetical protein ECP_4412 [Escherichia coli 536], gi\|110346116\|gb\|... gi\|117626514, gi... - gi\|117626514\|ref\|YP_859837.1\| hypothetical protein APECO1_2224 [Escherichia coli APEC O1], gi\|115515...	0.0	[1..514]	[1..514]
gi\|75236180 - gi\|75236180\|ref\|ZP_00720302.1\| COG0063: Predicted sugar kinase [Escherichia coli F11]	0.0	[1..514]	[1..514]
gi\|188490428, gi... - gi\|75515406\|ref\|ZP_00737563.1\| COG0063: Predicted sugar kinase [Escherichia coli 53638], gi\|18849522...	0.0	[1..514]	[1..514]
gi\|56480583, gi\|... - gi\|56480583\|ref\|NP_710032.2\| hypothetical protein SF4321 [Shigella flexneri 2a str. 301], gi\|5638413...	0.0	[1..514]	[1..514]

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Predicted Domain #1

Region A:
Residues: [1-515]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDHNMKKNP VSIPHSIWPA DDIKRLERDA ADAFGLTLYE LMLRAGDAAF RVARDSYPDA  60
   61 RHWLVLCGHG NNGGDGYVVA RLAQAAGISV TLLAQESDKP LPEEAAQARD AWLNAGGIIH 120
  121 AADIIWPEAT DLIIDALLGT GIAQEPRDPV AGLIEQANAH PAPVVAVDIP SGLLAQTGTT 180
  181 PGAVISAAHT VTFIALKPGL LTGKARDVTG ILHYDALGLE GWLASQTPPL RRFDATQLGQ 240
  241 WLTPRRPTSY KGDHGRLAII GGDQGTAGAI RMAGEAALRT GAGLVRVLTR GENIASLLTA 300
  301 RPELMVHELT PQSLEESLTW ADVVVIGPGL GQQEWGKKAL QKVENVRKPM LWDADALNLL 360
  361 AINPDKRHNR VITPHPGEAA RLLGCSVAEI ESDRLLSAQR LVKRYGGVVV LKGAGTIIAA 420
  421 EHHPLAIIDA GNAGMASGGM GDVLSGIIGA LLGQKFTPYD AACVGCVAHG AAADLLAARY 480
  481 GARGMLATDL FTTLRRIVNP DVIDVNHDES SNSAT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.69897
Match:	2ax3A
Description:	Crystal structure of hypothetical protein (tm0922) from THERMOTOGA MARITIMA at 2.27 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.74474587246986	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.47090819518452	bayes_pls_golite062009
kinase activity	1.44473837278874	bayes_pls_golite062009
transferase activity	1.38207816260569	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: