YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16763170
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	322 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16763170.

Description	E-value	Query Range	Subject Range
gi\|238910509 - gi\|238910509\|ref\|ZP_04654346.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALTY - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7... PSD_SALEP - Phosphatidylserine decarboxylase proenzyme OS=Salmonella enteritidis PT4 (strain P125109) GN=psd PE=... PSD_SALG2 - Phosphatidylserine decarboxylase proenzyme OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=... gi\|204926953, gi... - gi\|204926953\|ref\|ZP_03218155.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALPB - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) G... PSD_SALDC - Phosphatidylserine decarboxylase proenzyme OS=Salmonella dublin (strain CT_02021853) GN=psd PE=3 SV=... gi\|213428682 - gi\|213428682\|ref\|ZP_03361432.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALPB - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) G... gi\|213052290 - gi\|213052290\|ref\|ZP_03345168.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALCH - Phosphatidylserine decarboxylase proenzyme OS=Salmonella choleraesuis GN=psd PE=3 SV=1 PSD_SALPA - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi A GN=psd PE=3 SV=1 lcl\|NC_016856.1_... - [gene=psd] [protein=phosphatidylserine decarboxylase] [protein_id=YP_005240663.1] [location=compleme... PSD_SALNS - Phosphatidylserine decarboxylase proenzyme OS=Salmonella newport (strain SL254) GN=psd PE=3 SV=1 gi\|195630622, gi... - gi\|195630622\|gb\|EDX49234.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se... gi\|205347968, gi... - gi\|205347968\|gb\|EDZ34599.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se... gi\|205336305, gi... - gi\|205336305\|gb\|EDZ23069.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se... PSD_SALCH - Phosphatidylserine decarboxylase proenzyme OS=Salmonella choleraesuis (strain SC-B67) GN=psd PE=3 SV... PSD_SALPK - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi A (strain AKU_12601) GN=psd PE=3 ... PSD_SALPA - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=... gi\|197240792, gi... - gi\|197262537\|ref\|ZP_03162611.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric... PSD_SALSV - Phosphatidylserine decarboxylase proenzyme OS=Salmonella schwarzengrund (strain CVM19633) GN=psd PE=... PSD_SALHS - Phosphatidylserine decarboxylase proenzyme OS=Salmonella heidelberg (strain SL476) GN=psd PE=3 SV=1 PSD_SALTY - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhimurium GN=psd PE=3 SV=1 PSD_SALCH - Phosphatidylserine decarboxylase proenzyme OS=Salmonella choleraesuis GN=psd PE=3 SV=1 PSD_SALTY - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhimurium GN=psd PE=3 SV=1 gi\|197289990, gi... - gi\|197289990\|gb\|EDY29349.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se... gi\|167994768, gi... - gi\|205327414\|gb\|EDZ14178.1\| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se...	0.0	[1..322]	[1..322]
gi\|194428927, gi... - gi\|75209859\|ref\|ZP_00710057.1\| COG0688: Phosphatidylserine decarboxylase [Escherichia coli B171], gi... PSD_ECOHS - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O9:H4 (strain HS) GN=psd PE=3 SV=1	0.0	[1..320]	[1..320]
PSD_SHIFL - Phosphatidylserine decarboxylase proenzyme OS=Shigella flexneri GN=psd PE=3 SV=1 gi\|24115518, gi\|... - gi\|24115518\|ref\|NP_710028.1\| phosphatidylserine decarboxylase [Shigella flexneri 2a str. 301], gi\|24... gi\|30043799, gi\|... - gi\|30065535\|ref\|NP_839706.1\| phosphatidylserine decarboxylase [Shigella flexneri 2a str. 2457T], gi\|... PSD_ECO57 - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O157:H7 GN=psd PE=3 SV=1 EG10775 - phosphatidylserine decarboxylase / Phosphatidylserine decarboxylase, phospholipid biosynthesis gi\|12519145, gi\|... - gi\|15804752\|ref\|NP_290793.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 EDL933], gi\|... gi\|15834393, gi\|... - gi\|15834393\|ref\|NP_313166.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. Sakai],... PSD_ECOL5 - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=psd... PSD_SHIF8 - Phosphatidylserine decarboxylase proenzyme OS=Shigella flexneri serotype 5b (strain 8401) GN=psd PE=... PSD_ECOLI - Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65) [Contains: Phosphatidylserine decarboxylase... gi\|124498715, gi... - gi\|124531196\|ref\|ZP_01701541.1\| phosphatidylserine decarboxylase [Escherichia coli B], gi\|124498715\|... PSD_ECOL6 - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O6 GN=psd PE=3 SV=1 gi\|190904375, gi... - gi\|75231245\|ref\|ZP_00717652.1\| COG0688: Phosphatidylserine decarboxylase [Escherichia coli B7A], gi\|... gi\|192958872, gi... - gi\|75238689\|ref\|ZP_00722678.1\| COG0688: Phosphatidylserine decarboxylase [Escherichia coli E110019],... gi\|191173365, gi... - gi\|75239127\|ref\|ZP_00723107.1\| COG0688: Phosphatidylserine decarboxylase [Escherichia coli F11], gi\|... gi\|188492493, gi... - gi\|75514922\|ref\|ZP_00737151.1\| COG0688: Phosphatidylserine decarboxylase [Escherichia coli 53638], g... PSD_SHIBS - Phosphatidylserine decarboxylase proenzyme OS=Shigella boydii serotype 4 (strain Sb227) GN=psd PE=3 ... gi\|85676914, gi\|... - gi\|89110883\|ref\|AP_004663.1\| phosphatidylserine decarboxylase [Escherichia coli str. K-12 substr. W3... EG10775 - phosphatidylserine decarboxylase / Phosphatidylserine decarboxylase, phospholipid biosynthesis gi\|83587281, gi\|... - gi\|83587281\|ref\|ZP_00925910.1\| COG0688: Phosphatidylserine decarboxylase [Escherichia coli 101-1], g... PSD_SHIB3 - Phosphatidylserine decarboxylase proenzyme OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS51... PSD_ECOLC - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks... PSD_ECO24 - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=p... gi\|208819746, gi... - gi\|208819746\|ref\|ZP_03260066.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC40... PSD_ECO5E - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=psd... PSD_ECOSE - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli (strain SE11) GN=psd PE=3 SV=1 gi\|217320594, gi... - gi\|217324373\|ref\|ZP_03440457.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. TW14... PSD_ECO8A - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O8 (strain IAI1) GN=psd PE=3 SV=1 PSD_ECO81 - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O81 (strain ED1a) GN=psd PE=3 SV=1 PSD_ECOLU - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) G... gi\|254595582, gi... - gi\|254796182\|ref\|YP_003081019.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. TW1... gi\|253975993, gi... - gi\|254164092\|ref\|YP_003047200.1\| phosphatidylserine decarboxylase [Escherichia coli B str. REL606], ... gi\|226840282, gi... - gi\|254037176\|ref\|ZP_04871253.1\| phosphatidylserine decarboxylase [Escherichia sp. 1_1_43], gi\|226840... gi\|254290842, gi... - gi\|254290842\|ref\|YP_003056590.1\| phosphatidylserine decarboxylase [Escherichia coli BL21(DE3)], gi\|2... gi\|189374956, gi... - gi\|189374956\|gb\|EDU93372.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC869], ... gi\|242379686, gi... - gi\|251787413\|ref\|YP_003001717.1\| hypothetical protein B21_03992 [Escherichia coli BL21], gi\|24237968... PSD_ECOL6 - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / ... gi\|189375641, gi... - gi\|189375641\|gb\|EDU94057.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC508], ... PSD_ECOBW - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=psd... PSD_ECODH - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli (strain K12 / DH10B) GN=psd PE=3 SV=1 PSD_ECOSM - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=psd PE=3 ... gi\|194434745, gi... - gi\|194434745\|ref\|ZP_03066997.1\| phosphatidylserine decarboxylase [Shigella dysenteriae 1012], gi\|194... gi\|195935952 - gi\|195935952\|ref\|ZP_03081334.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC40... gi\|208727564, gi... - gi\|208807763\|ref\|ZP_03250100.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC42... gi\|208733368, gi... - gi\|208812091\|ref\|ZP_03253420.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC40... gi\|168755349, gi... - gi\|189357529\|gb\|EDU75948.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC4401],... gi\|189368562, gi... - gi\|189368562\|gb\|EDU86978.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC4501],... gi\|168766439, gi... - gi\|189364241\|gb\|EDU82660.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC4486],... gi\|187769870, gi... - gi\|187769870\|gb\|EDU33714.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC4196],... gi\|189001811, gi... - gi\|189001811\|gb\|EDU70797.1\| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC4076],...	0.0	[1..320]	[1..320]
gi\|237703829, gi... - gi\|237703829\|ref\|ZP_04534310.1\| phosphatidylserine decarboxylase subunit proenzyme [Escherichia sp. ... PSD_ECOUT - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli (strain UTI89 / UPEC) GN=psd PE=3 SV=... PSD_ECO45 - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=psd PE...	0.0	[1..320]	[1..320]
gi\|26251055, gi\|... - gi\|26251055\|ref\|NP_757095.1\| phosphatidylserine decarboxylase [Escherichia coli CFT073], gi\|26111487...	0.0	[1..320]	[1..320]
gi\|75256215, gi\|... - gi\|75256215\|ref\|ZP_00727903.1\| COG0688: Phosphatidylserine decarboxylase [Escherichia coli E22], gi\|...	0.0	[1..320]	[1..320]
PSD_SHIDS - Phosphatidylserine decarboxylase proenzyme OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=psd ...	0.0	[1..320]	[1..320]
PSD_SHISS - Phosphatidylserine decarboxylase proenzyme OS=Shigella sonnei (strain Ss046) GN=psd PE=3 SV=1	0.0	[1..320]	[1..320]
PSD_VIBVU - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus GN=psd PE=3 SV=1 PSD_VIBVY - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus (strain YJ016) GN=psd PE=3 SV=1 PSD_VIBVU - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus (strain CMCP6) GN=psd PE=3 SV=1	0.0	[2..285]	[1..283]
PSD_VIBPA - Phosphatidylserine decarboxylase proenzyme OS=Vibrio parahaemolyticus GN=psd PE=3 SV=1 PSD_VIBPA - Phosphatidylserine decarboxylase proenzyme OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 22...	0.0	[2..284]	[1..282]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSFKLSLQ YILPKLWLTR LAGWGASKRA GWLTKLVIDL FVKYYKVDMT EAQKPDTASY  60
   61 RT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [63-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNDFFVRPLR DDVRPLNTDP NILVMPADGV ISQLGRIEED KILQAKGHNY SLEALLAGNY  60
   61 LMADKFRNGT FVTTYLSPRD YHRVHMPCNG ILREMIYVPG DLFSVNYLTA QNVPNLFARN 120
  121 ERVICLFDTE FGPMAQILVG ATIVGSIETV WAGTITPPRE GIIKRWTWPE GEHEGSVALL 180
  181 KGQEMGRFKL GSTVINLFAP GKVNLIASLA SLSVTKIGQP LATSTETFVA PEVEPAPLPA 240
  241 EEIKAEHDAS PLVDNKKDDT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.16
Match:	2gprA
Description:	GLUCOSE PERMEASE IIA FROM MYCOPLASMA CAPRICOLUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.674366586819828	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: