YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16763168
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16763168.

Description	E-value	Query Range	Subject Range
YJEN_ECOLI - Hypothetical protein yjeN - Escherichia coli EG12476 - uncharacterized protein / Function unknown gi\|85676911, gi\|... - gi\|89110880\|ref\|AP_004660.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|188490220, gi... - gi\|75514919\|ref\|ZP_00737148.1\| hypothetical protein Ecol5_01001331 [Escherichia coli 53638], gi\|1884... gi\|238903267, gi... - gi\|238903267\|ref\|YP_002929063.1\| hypothetical protein BWG_3872 [Escherichia coli BW2952], gi\|2388630... gi\|193067903, gi... - gi\|75238686\|ref\|ZP_00722675.1\| hypothetical protein EcolE1_01001003 [Escherichia coli E110019], gi\|1... gi\|226840279, gi... - gi\|254037173\|ref\|ZP_04871250.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684027... EG12476 - uncharacterized protein / Function unknown gi\|170021830, gi... - gi\|170021830\|ref\|YP_001726784.1\| hypothetical protein EcolC_3853 [Escherichia coli ATCC 8739], gi\|16... gi\|218354641, gi... - gi\|218697909\|ref\|YP_002405576.1\| hypothetical protein EC55989_4714 [Escherichia coli 55989], gi\|2183... gi\|169891441, gi... - gi\|170083606\|ref\|YP_001732926.1\| hypothetical protein ECDH10B_4352 [Escherichia coli str. K-12 subst... gi\|124531199, gi... - gi\|124531199\|ref\|ZP_01701544.1\| conserved hypothetical protein [Escherichia coli B], gi\|124498718\|gb...	196.0	[0..20]	[120..1]
gi\|226901738, gi... - gi\|237703826\|ref\|ZP_04534307.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|115515630, gi... - gi\|117626506\|ref\|YP_859829.1\| hypothetical protein APECO1_2232 [Escherichia coli APEC O1], gi\|115515... gi\|218368088, gi... - gi\|218561319\|ref\|YP_002394232.1\| hypothetical protein ECS88_4745 [Escherichia coli S88], gi\|21836808... gi\|91213709, gi\|... - gi\|91213709\|ref\|YP_543695.1\| hypothetical protein UTI89_C4757 [Escherichia coli UTI89], gi\|91075283\|...	180.0	[0..20]	[120..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDKAPRVAS GVYCPMENVM NDSSRDPIIT EDEIRALNFT PEDILEIEKV ILSSVHVARR  60
   61 KVAMVVGMTI GTLRDRDEDK WKHVSDIYCA YVVRCLVFRG ELVGYGDLFR MRYSEINLPV 120
  121 ADLDA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.769	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.530	a.95.1	Influenza virus matrix protein M1
View	Download	0.501	a.47.2	t-snare proteins
View	Download	0.488	a.61.1	Retroviral matrix proteins
View	Download	0.436	a.45.1	Glutathione S-transferase (GST), C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits