YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29144636, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	44 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29144636, gi|....

Description	E-value	Query Range	Subject Range
gi\|238861037, gi... - gi\|238903257\|ref\|YP_002929053.1\| entericidin B membrane lipoprotein [Escherichia coli BW2952], gi\|23... gi\|242379675, gi... - gi\|251787402\|ref\|YP_003001706.1\| hypothetical protein B21_03981 [Escherichia coli BL21], gi\|24237967... gi\|227886807, gi... - gi\|227886807\|ref\|ZP_04004612.1\| entericidin B membrane lipoprotein [Escherichia coli 83972], gi\|2278... gi\|226901728, gi... - gi\|237703816\|ref\|ZP_04534297.1\| entericidin B membrane lipoprotein [Escherichia sp. 3_2_53FAA], gi\|2... gi\|253975982, gi... - gi\|254164081\|ref\|YP_003047189.1\| entericidin B membrane lipoprotein [Escherichia coli B str. REL606]... gi\|254595571, gi... - gi\|254796171\|ref\|YP_003081008.1\| entericidin B membrane lipoprotein [Escherichia coli O157:H7 str. T... gi\|254290831, gi... - gi\|254290831\|ref\|YP_003056579.1\| entericidin B membrane lipoprotein [Escherichia coli BL21(DE3)], gi... EG14345 - entericidin B membrane lipoprotein / Bacteriolytic lipoprotein entericidin B toxin gi\|226840269, gi... - gi\|254037163\|ref\|ZP_04871240.1\| entericidin B membrane lipoprotein [Escherichia sp. 1_1_43], gi\|2268... gi\|124498728, gi... - gi\|124531209\|ref\|ZP_01701554.1\| Entericidin EcnAB [Escherichia coli B], gi\|124498728\|gb\|EAY46232.1\| ... gi\|218368078, gi... - gi\|218561309\|ref\|YP_002394222.1\| entericidin B membrane lipoprotein [Escherichia coli S88], gi\|21836... gi\|218430050, gi... - gi\|218692486\|ref\|YP_002400698.1\| entericidin B membrane lipoprotein [Escherichia coli ED1a], gi\|2184... gi\|218697899, gi... - gi\|218697899\|ref\|YP_002405566.1\| entericidin B membrane lipoprotein [Escherichia coli 55989], gi\|218... gi\|209921640, gi... - gi\|209921640\|ref\|YP_002295724.1\| entericidin B membrane lipoprotein [Escherichia coli SE11], gi\|2099... gi\|215267568, gi... - gi\|215489496\|ref\|YP_002331927.1\| entericidin B membrane lipoprotein [Escherichia coli O127:H6 str. E... gi\|217326334, gi... - gi\|217326334\|ref\|ZP_03442418.1\| entericidin B [Escherichia coli O157:H7 str. TW14588], gi\|217322555\|... gi\|218358961, gi... - gi\|218551419\|ref\|YP_002385211.1\| entericidin B membrane lipoprotein [Escherichia fergusonii ATCC 354... gi\|208727279, gi... - gi\|208807478\|ref\|ZP_03249815.1\| entericidin B [Escherichia coli O157:H7 str. EC4206], gi\|208727279\|g... gi\|208734682, gi... - gi\|208813405\|ref\|ZP_03254734.1\| entericidin B [Escherichia coli O157:H7 str. EC4045], gi\|208734682\|g... gi\|208741953, gi... - gi\|208821830\|ref\|ZP_03262150.1\| entericidin B [Escherichia coli O157:H7 str. EC4042], gi\|208741953\|g... gi\|209400363, gi... - gi\|209400363\|ref\|YP_002273694.1\| entericidin B [Escherichia coli O157:H7 str. EC4115], gi\|209161763\|... ECNB_ECOL6 - Entericidin B OS=Escherichia coli O6 GN=ecnB PE=3 SV=1 gi\|168755337, gi... - gi\|189357496\|gb\|EDU75915.1\| entericidin B [Escherichia coli O157:H7 str. EC4401], gi\|168755337\|ref\|Z... gi\|168761017, gi... - gi\|189368523\|gb\|EDU86939.1\| entericidin B [Escherichia coli O157:H7 str. EC4501], gi\|168761017\|ref\|Z... gi\|168766427, gi... - gi\|189364298\|gb\|EDU82717.1\| entericidin B [Escherichia coli O157:H7 str. EC4486], gi\|168766427\|ref\|Z... gi\|187769908, gi... - gi\|187769908\|gb\|EDU33752.1\| entericidin B [Escherichia coli O157:H7 str. EC4196], gi\|168774526\|ref\|Z... gi\|168747989, gi... - gi\|188017528\|gb\|EDU55650.1\| entericidin B [Escherichia coli O157:H7 str. EC4113], gi\|168747989\|ref\|Z... ECNB_ECOLI - Entericidin B precursor - Escherichia coli gi\|194428950, gi... - gi\|194428950\|ref\|ZP_03061483.1\| entericidin B [Escherichia coli B171], gi\|194413003\|gb\|EDX29292.1\| e... gi\|38704235 - gi\|38704235\|ref\|NP_944583.1\| entericidin B membrane lipoprotein [Escherichia coli O157:H7 str. Sakai... gi\|194417009, gi... - gi\|194434728\|ref\|ZP_03066980.1\| entericidin B [Shigella dysenteriae 1012], gi\|194417009\|gb\|EDX33126.... gi\|110346100, gi... - gi\|110644508\|ref\|YP_672238.1\| entericidin B membrane lipoprotein [Escherichia coli 536], gi\|11034610... gi\|194437254, gi... - gi\|194437254\|ref\|ZP_03069352.1\| entericidin B [Escherichia coli 101-1], gi\|194423810\|gb\|EDX39799.1\| ... gi\|110617619, gi... - gi\|110808071\|ref\|YP_691591.1\| entericidin B membrane lipoprotein [Shigella flexneri 5 str. 8401], gi... gi\|195935941 - gi\|195935941\|ref\|ZP_03081323.1\| entericidin B membrane lipoprotein [Escherichia coli O157:H7 str. EC... gi\|191165635, gi... - gi\|191165635\|ref\|ZP_03027475.1\| entericidin B [Escherichia coli B7A], gi\|190904330\|gb\|EDV64039.1\| en... gi\|190906345, gi... - gi\|191173369\|ref\|ZP_03034898.1\| entericidin B [Escherichia coli F11], gi\|190906345\|gb\|EDV65955.1\| en... gi\|192926633, gi... - gi\|193065764\|ref\|ZP_03046828.1\| entericidin B [Escherichia coli E22], gi\|192926633\|gb\|EDV81263.1\| en... gi\|192958855, gi... - gi\|193067880\|ref\|ZP_03048846.1\| entericidin B [Escherichia coli E110019], gi\|192958855\|gb\|EDV89292.1... gi\|91075273, gi\|... - gi\|91213699\|ref\|YP_543685.1\| entericidin B membrane lipoprotein [Escherichia coli UTI89], gi\|9107527... gi\|169891432, gi... - gi\|170083597\|ref\|YP_001732917.1\| entericidin B membrane lipoprotein [Escherichia coli str. K-12 subs... gi\|170682398, gi... - gi\|170682398\|ref\|YP_001746545.1\| entericidin B [Escherichia coli SMS-3-5], gi\|170520116\|gb\|ACB18294.... gi\|187429170, gi... - gi\|187732178\|ref\|YP_001882841.1\| entericidin B [Shigella boydii CDC 3083-94], gi\|187429170\|gb\|ACD084... gi\|188488636, gi... - gi\|188493437\|ref\|ZP_03000707.1\| entericidin B [Escherichia coli 53638], gi\|188488636\|gb\|EDU63739.1\| ... gi\|189001656, gi... - gi\|189001656\|gb\|EDU70642.1\| entericidin B [Escherichia coli O157:H7 str. EC4076], gi\|168780580\|ref\|Z... gi\|189375135, gi... - gi\|189375135\|gb\|EDU93551.1\| entericidin B [Escherichia coli O157:H7 str. EC869], gi\|168784785\|ref\|ZP... gi\|74314638, gi\|... - gi\|74314638\|ref\|YP_313057.1\| entericidin B membrane lipoprotein [Shigella sonnei Ss046], gi\|73858115... gi\|168802341, gi... - gi\|189375651\|gb\|EDU94067.1\| entericidin B [Escherichia coli O157:H7 str. EC508], gi\|168802341\|ref\|ZP... gi\|85676901, gi\|... - gi\|89110870\|ref\|AP_004650.1\| entericidin B membrane lipoprotein [Escherichia coli str. K-12 substr. ... gi\|170021840, gi... - gi\|170021840\|ref\|YP_001726794.1\| entericidin B membrane lipoprotein [Escherichia coli ATCC 8739], gi... ECNB_SHIFL - Entericidin B OS=Shigella flexneri GN=ecnB PE=3 SV=1 ECNB_ECOL6 - Entericidin B OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ecnB PE=3 SV=1 gi\|24054831, gi\|... - gi\|24115506\|ref\|NP_710016.1\| entericidin B membrane lipoprotein [Shigella flexneri 2a str. 301], gi\|... EG14345 - entericidin B membrane lipoprotein / Bacteriolytic lipoprotein entericidin B toxin ECNB_ECO57 - Entericidin B OS=Escherichia coli O157:H7 GN=ecnB PE=3 SV=1 gi\|12519131, gi\|... - gi\|15804741\|ref\|NP_290782.1\| entericidin B membrane lipoprotein [Escherichia coli O157:H7 EDL933], g... gi\|157069295, gi... - gi\|157163615\|ref\|YP_001460933.1\| entericidin B membrane lipoprotein [Escherichia coli HS], gi\|157069...	6.0E-8	[1..44]	[1..44]
gi\|75514908 - gi\|75514908\|ref\|ZP_00737137.1\| COG5510: Predicted small secreted protein [Escherichia coli 53638]	1.0E-7	[9..44]	[22..57]
lcl\|NC_016856.1_... - [gene=ecnA] [protein=putative entericidin A precursor] [protein_id=YP_005240649.1] [location=4593026... gi\|197265149, gi... - gi\|197265149\|ref\|ZP_03165223.1\| putative entericidin A [Salmonella enterica subsp. enterica serovar ... gi\|16422897, gi\|... - gi\|16767584\|ref\|NP_463199.1\| putative entericidin A precursor [Salmonella typhimurium LT2], gi\|16422...	2.0E-7	[1..44]	[15..58]
gi\|16422898, gi\|... - gi\|16767585\|ref\|NP_463200.1\| entericidin B membrane lipoprotein [Salmonella typhimurium LT2], gi\|164... gi\|25512191, gi\|... - gi\|25512191\|pir\|\|AC1046 entericidin B precursor [imported] - Salmonella enterica subsp. enterica ser... gi\|16763158 - gi\|16763158\|ref\|NP_458775.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enterica... gi\|29140276, gi\|... - gi\|29144637\|ref\|NP_807979.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enterica... gi\|205274879, gi... - gi\|205355098\|ref\|YP_002228899.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. ente... gi\|197365057, gi... - gi\|197365057\|ref\|YP_002144694.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. ente... gi\|224470708, gi... - gi\|224586180\|ref\|YP_002639979.1\| entericidin B precursor [Salmonella enterica subsp. enterica serova... gi\|214003381 - gi\|214003381\|ref\|ZP_03414116.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enter... gi\|213978825 - gi\|213978825\|ref\|ZP_03406084.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enter... gi\|213852155 - gi\|213852155\|ref\|ZP_03381687.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enter... lcl\|NC_016856.1_... - [gene=ecnB] [protein=entericidin B membrane lipoprotein] [protein_id=YP_005240650.1] [location=45933... gi\|213418026 - gi\|213418026\|ref\|ZP_03351103.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enter... gi\|62130418, gi\|... - gi\|62182785\|ref\|YP_219202.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enterica... gi\|213052302 - gi\|213052302\|ref\|ZP_03345180.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enter... gi\|56130388, gi\|... - gi\|56416131\|ref\|YP_153206.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enterica... gi\|213028327 - gi\|213028327\|ref\|ZP_03342774.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enter... gi\|238912801 - gi\|238912801\|ref\|ZP_04656638.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enter... gi\|206711288, gi... - gi\|207859485\|ref\|YP_002246136.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. ente... gi\|213648408 - gi\|213648408\|ref\|ZP_03378461.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enter... gi\|213621855 - gi\|213621855\|ref\|ZP_03374638.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enter... gi\|213582720 - gi\|213582720\|ref\|ZP_03364546.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enter... gi\|213428695 - gi\|213428695\|ref\|ZP_03361445.1\| entericidin B membrane lipoprotein [Salmonella enterica subsp. enter...	2.0E-7	[1..44]	[1..44]
gi\|224470707, gi... - gi\|224586179\|ref\|YP_002639978.1\| putative entericidin A precursor [Salmonella enterica subsp. enteri... gi\|62130417, gi\|... - gi\|62182784\|ref\|YP_219201.1\| putative entericidin A precursor [Salmonella enterica subsp. enterica s...	5.0E-7	[1..44]	[20..63]
ECNB_CITFR - Entericidin B OS=Citrobacter freundii GN=ecnB PE=3 SV=1	6.0E-7	[1..44]	[1..44]
gi\|56130387, gi\|... - gi\|56416130\|ref\|YP_153205.1\| entericidin A precursor [Salmonella enterica subsp. enterica serovar Pa... gi\|197365056, gi... - gi\|197365056\|ref\|YP_002144693.1\| entericidin A precursor [Salmonella enterica subsp. enterica serova...	1.0E-6	[1..44]	[1..44]
gi\|24115505, gi\|... - gi\|24115505\|ref\|NP_710015.1\| entericidin A [Shigella flexneri 2a str. 301], gi\|24054830\|gb\|AAN45722....	9.0E-6	[1..44]	[1..41]

Back

Predicted Domain #1

Region A:
Residues: [1-44]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKRFIGLVA LVLLTGTLLT ACNTARGFGE DIQHLGHAIS RAAS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits