YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29144286, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	412 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29144286, gi|....

Description	E-value	Query Range	Subject Range
gi\|189359008, gi... - gi\|189359008\|gb\|EDU77427.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|168747135, gi... - gi\|188018292\|gb\|EDU56414.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|13363707, gi\|... - gi\|15833487\|ref\|NP_312260.1\| outer membrane porin HofQ [Escherichia coli O157:H7 str. Sakai], gi\|133... gi\|209162200, gi... - gi\|209400800\|ref\|YP_002272825.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115], gi... gi\|208821093, gi... - gi\|208821093\|ref\|ZP_03261413.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|13363707, gi\|... - gi\|15833487\|ref\|NP_312260.1\| putative transport portein [Escherichia coli O157:H7], gi\|13363707\|dbj\|... gi\|209756646, gi... - pir\|\|G86003 probable transport portein hofQ [imported] - Escherichia coli (strain O157:H7, substrain... gi\|217320614, gi... - gi\|217324393\|ref\|ZP_03440477.1\| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588], gi... gi\|189380180, gi... - gi\|189380180\|gb\|EDU98596.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC508], gi\|16879... gi\|12518014, gi\|... - gi\|15803894\|ref\|NP_289930.1\| outer membrane porin HofQ [Escherichia coli O157:H7 EDL933], gi\|1251801... gi\|189374266, gi... - gi\|189374266\|gb\|EDU92682.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|208814350, gi... - gi\|208814350\|ref\|ZP_03255679.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|208726906, gi... - gi\|208807105\|ref\|ZP_03249442.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|168765735, gi... - gi\|189364497\|gb\|EDU82916.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|254594705, gi... - gi\|254795305\|ref\|YP_003080142.1\| predicted fimbrial transporter [Escherichia coli O157:H7 str. TW143... gi\|189369829, gi... - gi\|189369829\|gb\|EDU88245.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|168779471, gi... - gi\|189002616\|gb\|EDU71602.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|168772721, gi... - gi\|187771720\|gb\|EDU35564.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196], gi\|1687...	356.0	[0..1]	[412..1]
gi\|170082908, gi... - gi\|170082908\|ref\|YP_001732228.1\| fimbrial transporter [Escherichia coli str. K-12 substr. DH10B], gi... EG12113 - DNA catabolic putative fimbrial transporter / Required for the utilization of DNA as a carbon source... HOFQ_ECOLI - Protein transport protein hofQ precursor - Escherichia coli EG12113 - DNA catabolic putative fimbrial transporter / Required for the utilization of DNA as a carbon source... gi\|157158971, gi... - gi\|157158971\|ref\|YP_001464845.1\| outer membrane porin HofQ [Escherichia coli E24377A], gi\|157081001\|... gi\|229774932 - gi\|229774932\|ref\|YP_690743.2\| outer membrane porin HofQ [Shigella flexneri 5 str. 8401] gi\|73857373, gi\|... - gi\|74313896\|ref\|YP_312315.1\| outer membrane porin HofQ [Shigella sonnei Ss046], gi\|73857373\|gb\|AAZ90... gi\|85676650, gi\|... - gi\|89110619\|ref\|AP_004399.1\| predicted fimbrial transporter [Escherichia coli str. K-12 substr. W311... gi\|218555936, gi... - gi\|218555936\|ref\|YP_002388849.1\| outer membrane porin HofQ [Escherichia coli IAI1], gi\|218362704\|emb... gi\|238902482, gi... - gi\|238902482\|ref\|YP_002928278.1\| putative fimbrial transporter [Escherichia coli BW2952], gi\|2388623...	355.0	[0..1]	[412..1]
gi\|56383876, gi\|... - gi\|56480325\|ref\|NP_709164.2\| outer membrane porin HofQ [Shigella flexneri 2a str. 301], gi\|56383876\|... gi\|30043587, gi\|... - gi\|30065325\|ref\|NP_839496.1\| outer membrane porin HofQ [Shigella flexneri 2a str. 2457T], gi\|3004358...	354.0	[0..1]	[412..1]
gi\|81247157, gi\|... - gi\|82545746\|ref\|YP_409693.1\| outer membrane porin HofQ [Shigella boydii Sb227], gi\|81247157\|gb\|ABB67...	353.0	[0..1]	[412..1]
gi\|26249985, gi\|... - gi\|26249985\|ref\|NP_756025.1\| outer membrane porin HofQ [Escherichia coli CFT073], gi\|26110414\|gb\|AAN... gi\|227839400, gi... - gi\|227883521\|ref\|ZP_04001326.1\| competence protein E [Escherichia coli 83972], gi\|227839400\|gb\|EEJ49...	353.0	[0..1]	[412..1]
gi\|110643624, gi... - gi\|110643624\|ref\|YP_671354.1\| outer membrane porin HofQ [Escherichia coli 536], gi\|110345216\|gb\|ABG7... gi\|191171563, gi... - gi\|191171563\|ref\|ZP_03033111.1\| protein transporter HofQ [Escherichia coli F11], gi\|190908190\|gb\|EDV... gi\|215266744, gi... - gi\|215488672\|ref\|YP_002331103.1\| outer membrane porin HofQ [Escherichia coli O127:H6 str. E2348/69],...	353.0	[0..1]	[412..1]
gi\|115514783, gi... - gi\|117625659\|ref\|YP_858982.1\| outer membrane porin HofQ [Escherichia coli APEC O1], gi\|115514783\|gb\|... gi\|91074437, gi\|... - gi\|91212863\|ref\|YP_542849.1\| outer membrane porin HofQ [Escherichia coli UTI89], gi\|91074437\|gb\|ABE0... gi\|218367217, gi... - gi\|218560448\|ref\|YP_002393361.1\| outer membrane porin HofQ [Escherichia coli S88], gi\|218367217\|emb\|... gi\|237703118, gi... - gi\|237703118\|ref\|ZP_04533599.1\| protein transporter HofQ [Escherichia sp. 3_2_53FAA], gi\|226902382\|g...	351.0	[0..1]	[412..1]
gi\|16422046, gi\|... - gi\|16766776\|ref\|NP_462391.1\| outer membrane porin HofQ [Salmonella typhimurium LT2], gi\|16422046\|gb\|... lcl\|NC_016856.1_... - [gene=hofQ] [protein=outer membrane porin HofQ] [protein_id=YP_005239686.1] [location=complement(365...	345.0	[0..1]	[412..1]
gi\|62181990, gi\|... - gi\|62181990\|ref\|YP_218407.1\| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar ...	344.0	[0..1]	[412..1]
gi\|56415404, gi\|... - gi\|56415404\|ref\|YP_152479.1\| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar ... gi\|197095811, gi... - gi\|197364334\|ref\|YP_002143971.1\| outer membrane porin HofQ [Salmonella enterica subsp. enterica sero...	341.0	[0..1]	[412..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRWIAIILI VLMPAAQAGK AAKVTLVVDD VPVVQVLQAL AEQERQNLVV SPDVSGTLSL  60
   61 HLTDVPWKQA LQTVVNSAGL VLRQEGNILH VHSQAWQKEH SARQDAERLR LQAN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPLENRSISL QYADAGELAK AGEKLLSAKG TIMVDKRTNR LLLRDNRAAL AELEKWVSQM  60
   61 DLPVAQVELA AHIVTINEKS LRELGVKWTL ADATQAGAV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.585027
Match:	PF03958.5
Description:	No description for PF03958.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [214-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDVTTLSSDL SVAAATSRVG FNIGRINGRL LDLELSALEQ KQQLDIIASP RLLASHLQPA  60
   61 SIKQGSEIPY QVSSGESGAT SVEFKEAVLG MEVTPTVLQK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [314-412]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRIRLKLHIS QNVPGQVLQQ ADGEVLAIDK QEIETQVEVK SGETLALGGI FSRKNKSGSD  60
   61 SVPLLGDIPW LGQLFRHDGK EDERRELVVF ITPRLVATE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits