YRC Public Data Repository - Protein Structure Prediction

Protein:	HSLO_SALTI
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSLO_SALTI.

Description	E-value	Query Range	Subject Range
HSLO_ECO57 - 33 kDa chaperonin OS=Escherichia coli O157:H7 GN=hslO PE=3 SV=1 EG12930 - heat shock protein Hsp33 / Hsp33, oxidative stress-induced heat shock chaperone; C-terminal zinc-bin... HSLO_ECOL6 - 33 kDa chaperonin OS=Escherichia coli O6 GN=hslO PE=3 SV=1 gi\|89110609, gi\|... - gi\|89110609\|ref\|AP_004389.1\| heat shock protein Hsp33 [Escherichia coli str. K-12 substr. W3110], gi... gi\|13363717, gi\|... - gi\|162139723\|ref\|NP_312270.3\| Hsp33-like chaperonin [Escherichia coli O157:H7 str. Sakai], gi\|133637... HSLO_ECO81 - 33 kDa chaperonin OS=Escherichia coli O81 (strain ED1a) GN=hslO PE=3 SV=1 HSLO_ECO45 - 33 kDa chaperonin OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=hslO PE=3 SV=1 HSLO_ECO8A - 33 kDa chaperonin OS=Escherichia coli O8 (strain IAI1) GN=hslO PE=3 SV=1 HSLO_ECO27 - 33 kDa chaperonin OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=hslO PE=3 SV=1 HSLO_ECO55 - 33 kDa chaperonin OS=Escherichia coli (strain 55989 / EAEC) GN=hslO PE=3 SV=1 gi\|161367508 - gi\|161367508\|ref\|NP_289940.2\| Hsp33-like chaperonin [Escherichia coli O157:H7 EDL933] HSLO_ECOSM - 33 kDa chaperonin OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hslO PE=3 SV=1 HSLO_ECODH - 33 kDa chaperonin OS=Escherichia coli (strain K12 / DH10B) GN=hslO PE=3 SV=1 gi\|189369606, gi... - gi\|189369606\|gb\|EDU88022.1\| chaperonin HslO [Escherichia coli O157:H7 str. EC4501], gi\|168759423\|ref... HSLO_ECOL6 - 33 kDa chaperonin OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=hslO PE=3 SV=1 HSLO_SHIDS - 33 kDa chaperonin OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=hslO PE=3 SV=2 HSLO_SHISS - 33 kDa chaperonin OS=Shigella sonnei (strain Ss046) GN=hslO PE=3 SV=2 sp\|B7UKA5\|HSLO_ECO27 - 33 kDa chaperonin OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=hslO PE=3 SV=1 HSLO_ECOLI - 33 kDa chaperonin (Heat shock protein 33) (HSP33) - Escherichia coli gi\|251786652, gi... - gi\|251786652\|ref\|YP_003000956.1\| hypothetical protein B21_03205 [Escherichia coli BL21], gi\|24237892... HSLO_ECOBW - 33 kDa chaperonin OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=hslO PE=3 SV=1 gi\|253975230, gi... - gi\|254163329\|ref\|YP_003046437.1\| Hsp33-like chaperonin [Escherichia coli B str. REL606], gi\|25397523... EG12930 - heat shock protein Hsp33 / Hsp33, oxidative stress-induced heat shock chaperone; C-terminal zinc-bin... gi\|254290079, gi... - gi\|254290079\|ref\|YP_003055827.1\| Hsp33-like chaperonin [Escherichia coli BL21(DE3)], gi\|253979386\|gb... gi\|254594715, gi... - gi\|254795315\|ref\|YP_003080152.1\| heat shock protein Hsp33 [Escherichia coli O157:H7 str. TW14359], g...	0.0	[1..292]	[1..292]
gi\|217321008, gi... - gi\|217324787\|ref\|ZP_03440871.1\| chaperonin HslO [Escherichia coli O157:H7 str. TW14588], gi\|21732100... gi\|115514792, gi... - gi\|117625668\|ref\|YP_858991.1\| Hsp33-like chaperonin [Escherichia coli APEC O1], gi\|115514792\|gb\|ABJ0... gi\|124528174, gi... - gi\|124528174\|ref\|ZP_01699507.1\| Hsp33 protein [Escherichia coli B], gi\|124500829\|gb\|EAY48298.1\| Hsp3... gi\|189380034, gi... - gi\|189405503\|ref\|ZP_02822176.2\| chaperonin HslO [Escherichia coli O157:H7 str. EC508], gi\|189380034\|... gi\|189404709, gi... - gi\|189404709\|ref\|ZP_02810210.2\| chaperonin HslO [Escherichia coli O157:H7 str. EC869], gi\|189374571\|... gi\|208727739, gi... - gi\|208807938\|ref\|ZP_03250275.1\| chaperonin HslO [Escherichia coli O157:H7 str. EC4206], gi\|208727739... gi\|195934889 - gi\|195934889\|ref\|ZP_03080271.1\| Hsp33-like chaperonin [Escherichia coli O157:H7 str. EC4024] gi\|208740356, gi... - gi\|208820233\|ref\|ZP_03260553.1\| chaperonin HslO [Escherichia coli O157:H7 str. EC4042], gi\|208740356... gi\|208735106, gi... - gi\|208813829\|ref\|ZP_03255158.1\| chaperonin HslO [Escherichia coli O157:H7 str. EC4045], gi\|208735106... gi\|209914113, gi... - gi\|209920854\|ref\|YP_002294938.1\| Hsp33-like chaperonin [Escherichia coli SE11], gi\|209914113\|dbj\|BAG... gi\|209157564, gi... - gi\|209396164\|ref\|YP_002272835.1\| chaperonin HslO [Escherichia coli O157:H7 str. EC4115], gi\|20915756... gi\|227839411, gi... - gi\|227883532\|ref\|ZP_04001337.1\| HSP33 family chaperone [Escherichia coli 83972], gi\|227839411\|gb\|EEJ... gi\|237703129, gi... - gi\|237703129\|ref\|ZP_04533610.1\| heat shock protein 33 [Escherichia sp. 3_2_53FAA], gi\|226902393\|gb\|E... gi\|606335\|gb\|AAA... - ORF_o294 [Escherichia coli] gi\|226839073, gi... - gi\|254038567\|ref\|ZP_04872623.1\| chaperonin HslO [Escherichia sp. 1_1_43], gi\|226839073\|gb\|EEH71096.1... gi\|7465970, gi\|2... - gi\|7465970\|pir\|\|D65135 hypothetical 32.8 kD protein in mrcA-pckA intergenic region - Escherichia col... gi\|38704166 - gi\|38704166\|ref\|NP_312270.2\| Hsp33-like chaperonin [Escherichia coli O157:H7] gi\|26249996, gi\|... - gi\|26249996\|ref\|NP_756036.1\| Hsp33-like chaperonin [Escherichia coli CFT073], gi\|26110425\|gb\|AAN8261... gi\|12518027, gi\|... - gi\|15803904\|ref\|NP_289940.1\| Hsp33-like chaperonin [Escherichia coli O157:H7 EDL933], gi\|12518027\|gb... gi\|1789804, gi\|1... - gb\|AAC76426.1\| Hsp33; redox regulated chaperone; heat shock protein 33, redox regulated chaperone [E... gi\|193061853, gi... - gi\|75260310\|ref\|ZP_00731578.1\| COG1281: Disulfide bond chaperones of the HSP33 family [Escherichia c... gi\|188493953, gi... - gi\|75516131\|ref\|ZP_00738249.1\| COG1281: Disulfide bond chaperones of the HSP33 family [Escherichia c... gi\|193068766, gi... - gi\|75237002\|ref\|ZP_00721058.1\| COG1281: Disulfide bond chaperones of the HSP33 family [Escherichia c... gi\|191171527, gi... - gi\|75241509\|ref\|ZP_00725354.1\| COG1281: Disulfide bond chaperones of the HSP33 family [Escherichia c... gi\|73857382, gi\|... - gi\|74313905\|ref\|YP_312324.1\| hypothetical protein SSON_3532 [Shigella sonnei Ss046], gi\|73857382\|gb\|... gi\|82778784, gi\|... - gi\|82778784\|ref\|YP_405133.1\| hypothetical protein SDY_3677 [Shigella dysenteriae Sd197], gi\|81242932... gi\|91074447, gi\|... - gi\|91212873\|ref\|YP_542859.1\| Hsp33-like chaperonin [Escherichia coli UTI89], gi\|91074447\|gb\|ABE09328... gi\|83588734, gi\|... - gi\|83588734\|ref\|ZP_00927358.1\| COG1281: Disulfide bond chaperones of the HSP33 family [Escherichia c... gi\|38704166 - gi\|38704166\|ref\|NP_312270.2\| Hsp33-like chaperonin [Escherichia coli O157:H7 str. Sakai] gi\|110643634, gi... - gi\|110643634\|ref\|YP_671364.1\| Hsp33-like chaperonin [Escherichia coli 536], gi\|110345226\|gb\|ABG71463... gi\|187775643, gi... - gi\|187775643\|ref\|ZP_02797717.2\| chaperonin HslO [Escherichia coli O157:H7 str. EC4196], gi\|187771355... gi\|170018363, gi... - gi\|170018363\|ref\|YP_001723317.1\| Hsp33-like chaperonin [Escherichia coli ATCC 8739], gi\|169753291\|gb... gi\|75211767, gi\|... - gi\|75211767\|ref\|ZP_00711831.1\| COG1281: Disulfide bond chaperones of the HSP33 family [Escherichia c... gi\|189002668, gi... - gi\|189010138\|ref\|ZP_02804489.2\| chaperonin HslO [Escherichia coli O157:H7 str. EC4076], gi\|189002668... gi\|191167897, gi... - gi\|75228945\|ref\|ZP_00715537.1\| COG1281: Disulfide bond chaperones of the HSP33 family [Escherichia c... gi\|188018303, gi... - gi\|188024495\|ref\|ZP_02772146.2\| chaperonin HslO [Escherichia coli O157:H7 str. EC4113], gi\|188018303... gi\|75188175, gi\|... - gi\|75188175\|ref\|ZP_00701442.1\| COG1281: Disulfide bond chaperones of the HSP33 family [Escherichia c... gi\|189364529, gi... - gi\|189402732\|ref\|ZP_02790753.2\| chaperonin HslO [Escherichia coli O157:H7 str. EC4486], gi\|189364529... gi\|157162877, gi... - gi\|75197332\|ref\|ZP_00707402.1\| COG1281: Disulfide bond chaperones of the HSP33 family [Escherichia c... gi\|189401878, gi... - gi\|189401878\|ref\|ZP_02778158.2\| chaperonin HslO [Escherichia coli O157:H7 str. EC4401], gi\|189359338...	0.0	[1..292]	[3..294]
lcl\|NC_016856.1_... - [gene=hslO] [protein=Hsp33-like chaperonin] [protein_id=YP_005239697.1] [location=3667384..3668262] HSLO_SALTY - 33 kDa chaperonin OS=Salmonella typhimurium GN=hslO PE=3 SV=2 HSLO_SALTY - 33 kDa chaperonin OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=hslO PE=3 SV=2 HSLO_SALTY - 33 kDa chaperonin OS=Salmonella typhimurium GN=hslO PE=3 SV=2	0.0	[1..292]	[1..292]
gi\|205330650, gi... - gi\|205357594\|ref\|ZP_02571798.2\| chaperonin HslO [Salmonella enterica subsp. enterica serovar 4,[5],1... gi\|197264805, gi... - gi\|197264805\|ref\|ZP_03164879.1\| chaperonin HslO [Salmonella enterica subsp. enterica serovar Saintpa... gi\|16422056, gi\|... - gi\|16766786\|ref\|NP_462401.1\| Hsp33-like chaperonin [Salmonella typhimurium LT2], gi\|16422056\|gb\|AAL2...	0.0	[1..292]	[3..294]
gi\|83571678 - gi\|83571678\|ref\|ZP_00923118.1\| COG1281: Disulfide bond chaperones of the HSP33 family [Shigella dyse...	0.0	[1..292]	[3..294]
gi\|81247167, gi\|... - gi\|82545756\|ref\|YP_409703.1\| hypothetical protein SBO_3388 [Shigella boydii Sb227], gi\|81247167\|gb\|A...	0.0	[1..292]	[3..294]
gi\|161365900, gi... - gi\|161616536\|ref\|YP_001590501.1\| Hsp33-like chaperonin [Salmonella enterica subsp. enterica serovar ... gi\|62182000, gi\|... - gi\|62182000\|ref\|YP_218417.1\| Hsp33-like chaperonin [Salmonella enterica subsp. enterica serovar Chol...	0.0	[1..292]	[3..294]
HSLO_SALPA - 33 kDa chaperonin OS=Salmonella paratyphi A GN=hslO PE=3 SV=1 HSLO_SALPK - 33 kDa chaperonin OS=Salmonella paratyphi A (strain AKU_12601) GN=hslO PE=3 SV=1 HSLO_SALPA - 33 kDa chaperonin OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=hslO PE=3 SV=1	0.0	[1..292]	[1..292]
gi\|187428841, gi... - gi\|75179981\|ref\|ZP_00699968.1\| COG1281: Disulfide bond chaperones of the HSP33 family [Shigella boyd...	0.0	[1..292]	[3..294]
HSLO_SHIFL - 33 kDa chaperonin OS=Shigella flexneri GN=hslO PE=3 SV=4 HSLO_SHIF8 - 33 kDa chaperonin OS=Shigella flexneri serotype 5b (strain 8401) GN=hslO PE=3 SV=1 gi\|30043578, gi\|... - gi\|30065316\|ref\|NP_839487.1\| Hsp33-like chaperonin [Shigella flexneri 2a str. 2457T], gi\|30043578\|gb... gi\|56480328, gi\|... - gi\|56480328\|ref\|NP_709173.2\| Hsp33-like chaperonin [Shigella flexneri 2a str. 301], gi\|56383879\|gb\|A...	0.0	[1..289]	[1..289]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQHDQLHRY LFENFAVRGE LVTVSETLQQ ILDNHNYPQS VKTVLAELLV ATSLLTATLK  60
   61 FAGDITVQLQ GDGPLSLAVI NGNNQQQMRG VARVQGDIPD NADLKTLVGN GYLVITITPE 120
  121 EGERYQGVVG LEGDTLAACL EDYFLRSEQL PTRLFIRTGD VDGKPAAGGM LLQVMPAQNA 180
  181 QAEDFDHLAM LTETIKSEEL LTLPANDVLW RLYHEEEVTL YDPQEVEFKC TCSRERCAGA 240
  241 LKTLPDEEVD SILAEEGEID MHCDYCGNHY LFNAMDIAEI RNNASPADPQ VH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	116.0
Match:	1i7fA
Description:	Heat shock protein 33, Hsp33
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.55988368958585	bayes_pls_golite062009
catalytic activity	0.276917867171685	bayes_pls_golite062009
protein binding	0.100538309706115	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: