YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16762765
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	431 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16762765.

Description	E-value	Query Range	Subject Range
GLGC_SALPA - Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=glg... GLGC_SALTY - Glucose-1-phosphate adenylyltransferase OS=Salmonella typhimurium GN=glgC PE=3 SV=2 GLGC_SALPA - Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi A GN=glgC PE=3 SV=1 gi\|199603949, gi... - gi\|200386851\|ref\|ZP_03213463.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... gi\|204322227, gi... - gi\|204928794\|ref\|ZP_03219993.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... GLGC_SALEP - Glucose-1-phosphate adenylyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=glgC PE=3 ... GLGC_SALHS - Glucose-1-phosphate adenylyltransferase OS=Salmonella heidelberg (strain SL476) GN=glgC PE=3 SV=1 GLGC_SALSV - Glucose-1-phosphate adenylyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=glgC PE=3 ... gi\|197264772, gi... - gi\|197264772\|ref\|ZP_03164846.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... lcl\|NC_016856.1_... - [gene=glgC] [protein=glucose-1-phosphate adenylyltransferase] [protein_id=YP_005239741.1] [location=... GLGC_SALPK - Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=glgC PE=3 SV... gi\|168235124, gi... - gi\|197291593\|gb\|EDY30945.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... GLGC_SALTY - Glucose-1-phosphate adenylyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... gi\|168241681, gi... - gi\|205338928\|gb\|EDZ25692.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... gi\|168465190, gi... - gi\|195632335\|gb\|EDX50819.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... GLGC_SALNS - Glucose-1-phosphate adenylyltransferase OS=Salmonella newport (strain SL254) GN=glgC PE=3 SV=1 gi\|167990744, gi... - gi\|205330818\|gb\|EDZ17582.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... GLGC_SALTY - Glucose-1-phosphate adenylyltransferase OS=Salmonella typhimurium GN=glgC PE=3 SV=2	5.0E-82	[1..431]	[1..431]
gi\|168260741, gi... - gi\|205350446\|gb\|EDZ37077.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... gi\|168232677, gi... - gi\|205333146\|gb\|EDZ19910.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... GLGC_SALA4 - Glucose-1-phosphate adenylyltransferase OS=Salmonella agona (strain SL483) GN=glgC PE=3 SV=1 gi\|205344381, gi... - gi\|205344381\|gb\|EDZ31145.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... gi\|238910462 - gi\|238910462\|ref\|ZP_04654299.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... gi\|205325539, gi... - gi\|205325539\|gb\|EDZ13378.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... GLGC_SALCH - Glucose-1-phosphate adenylyltransferase OS=Salmonella choleraesuis GN=glgC PE=3 SV=1 GLGC_SALPB - Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=g... GLGC_SALCH - Glucose-1-phosphate adenylyltransferase OS=Salmonella choleraesuis GN=glgC PE=3 SV=1 GLGC_SALPB - Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=g... GLGC_SALPC - Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=glgC PE=3 SV=1 GLGC_SALCH - Glucose-1-phosphate adenylyltransferase OS=Salmonella choleraesuis (strain SC-B67) GN=glgC PE=3 SV=1	5.0E-82	[1..431]	[1..431]
GLGC_ECOHS - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=glgC PE=3 SV=1 GLGC_ECO24 - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=glgC... gi\|124528204, gi... - gi\|124528204\|ref\|ZP_01699537.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli B], gi\|124... GLGC_ECO8A - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O8 (strain IAI1) GN=glgC PE=3 SV=1 GLGC_ECO81 - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O81 (strain ED1a) GN=glgC PE=3 SV=1 GLGC_ECO55 - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=glgC PE=3 SV=1 GLGC_ECOLU - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=g... gi\|208739774, gi... - gi\|208819651\|ref\|ZP_03259971.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 st... GLGC_ECO5E - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=glgC P... GLGC_ECOSE - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain SE11) GN=glgC PE=3 SV=1 gi\|217321372, gi... - gi\|217325151\|ref\|ZP_03441235.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 st... gi\|194425428, gi... - gi\|194435885\|ref\|ZP_03067988.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli 101-1], gi... gi\|195934922 - gi\|195934922\|ref\|ZP_03080304.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 st... gi\|208808428, gi... - gi\|208808428\|ref\|ZP_03250765.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 st... gi\|208735853, gi... - gi\|208814576\|ref\|ZP_03255905.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 st... gi\|193061720, gi... - gi\|193061720\|ref\|ZP_03042817.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli E22], gi\|1... gi\|193068867, gi... - gi\|193068867\|ref\|ZP_03049827.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli E110019], ... gi\|194414951, gi... - gi\|194426990\|ref\|ZP_03059542.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli B171], gi\|... gi\|194431234, gi... - gi\|194431234\|ref\|ZP_03063527.1\| glucose-1-phosphate adenylyltransferase [Shigella dysenteriae 1012],... GLGC_ECOLC - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) G... gi\|253771741, gi... - gi\|253771741\|ref\|YP_003034572.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli BL21(DE3)... gi\|254594749, gi... - gi\|254795349\|ref\|YP_003080186.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 s... GLGC_ECOBW - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=glgC P... gi\|251786681, gi... - gi\|251786681\|ref\|YP_003000985.1\| hypothetical protein B21_03235 [Escherichia coli BL21], gi\|24237895... GLGC_SHISS - Glucose-1-phosphate adenylyltransferase OS=Shigella sonnei (strain Ss046) GN=glgC PE=3 SV=1 GLGC_ECOL6 - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O6 GN=glgC PE=3 SV=2 gi\|56383890, gi\|... - gi\|56480339\|ref\|NP_709206.2\| glucose-1-phosphate adenylyltransferase [Shigella flexneri 2a str. 301]... gi\|15833529, gi\|... - gi\|15833529\|ref\|NP_312302.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 str. ... GLGC_ECOL5 - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=glgC P... GLGC_SHIDS - Glucose-1-phosphate adenylyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=glgC PE... GLGC_SHIF8 - Glucose-1-phosphate adenylyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=glgC PE=3 ... gi\|85676612, gi\|... - gi\|89110581\|ref\|AP_004361.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli str. K-12 sub... GLGC_ECOSM - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=glgC PE=3 SV... gi\|188490001, gi... - gi\|188494802\|ref\|ZP_03002072.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli 53638], gi... gi\|191167302, gi... - gi\|191167302\|ref\|ZP_03029119.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli B7A], gi\|1... gi\|191171561, gi... - gi\|191171561\|ref\|ZP_03033109.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli F11], gi\|1... gi\|189002338, gi... - gi\|189002338\|gb\|EDU71324.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 str. E... gi\|168785241, gi... - gi\|189374574\|gb\|EDU92990.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 str. E... gi\|189379994, gi... - gi\|189379994\|gb\|EDU98410.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 str. E... GLGC_ECODH - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=glgC PE=3 SV=1 gi\|189359312, gi... - gi\|189359312\|gb\|EDU77731.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 str. E... gi\|168759461, gi... - gi\|189369657\|gb\|EDU88073.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 str. E... gi\|189364433, gi... - gi\|189364433\|gb\|EDU82852.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 str. E... gi\|187771662, gi... - gi\|187771662\|gb\|EDU35506.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 str. E... GLGC_ECOL6 - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE... EG10379 - glucose-1-phosphate adenylyltransferase / Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrop... gi\|188018413, gi... - gi\|188018413\|gb\|EDU56535.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 str. E... GLGC_ECOLI - Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosph... GLGC_SHIFL - Glucose-1-phosphate adenylyltransferase OS=Shigella flexneri GN=glgC PE=3 SV=2 GLGC_ECO57 - Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O157:H7 GN=glgC PE=3 SV=2 gi\|30065286, gi\|... - gi\|30065286\|ref\|NP_839457.1\| glucose-1-phosphate adenylyltransferase [Shigella flexneri 2a str. 2457... gi\|15803939, gi\|... - gi\|15803939\|ref\|NP_289975.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli O157:H7 EDL93... EG10379 - glucose-1-phosphate adenylyltransferase / Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrop...	5.0E-80	[1..431]	[1..431]
GLGC_SHIB3 - Glucose-1-phosphate adenylyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) ... GLGC_SHIBS - Glucose-1-phosphate adenylyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=glgC PE=3 SV...	7.0E-80	[1..431]	[1..431]
gi\|299130 - gi\|299130\|gb\|AAB26162.1\| ADPglucose pyrophosphorylase; ADPGlc PPase [Escherichia coli]	1.0E-79	[1..431]	[1..431]
gi\|226902434, gi... - gi\|237703170\|ref\|ZP_04533651.1\| glucose-1-phosphate adenylyltransferase GlgC [Escherichia sp. 3_2_53... gi\|91212913, gi\|... - gi\|91212913\|ref\|YP_542899.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli UTI89], gi\|91... gi\|115514828, gi... - gi\|117625704\|ref\|YP_859027.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli APEC O1], gi...	1.0E-79	[1..431]	[13..443]
gi\|226839103, gi... - gi\|254038597\|ref\|ZP_04872653.1\| glucose-1-phosphate adenylyltransferase [Escherichia sp. 1_1_43], gi... gi\|26110470, gi\|... - gi\|26250041\|ref\|NP_756081.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli CFT073], gi\|2... gi\|24114696, gi\|... - ref\|NP_709206.1\| glucose-1-phosphate adenylyltransferase [Shigella flexneri 2a str. 301], gb\|AAN449...	2.0E-79	[1..431]	[13..443]
GLGC_YERPS - Glucose-1-phosphate adenylyltransferase OS=Yersinia pseudotuberculosis GN=glgC PE=3 SV=1 GLGC_YERPB - Glucose-1-phosphate adenylyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN... GLGC_YERPS - Glucose-1-phosphate adenylyltransferase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) G...	5.0E-79	[1..428]	[1..428]

Back

Predicted Domain #1

Region A:
Residues: [1-431]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLEKNDRV MLARQLPLKS VALILAGGRG TRLKDLTNKR AKPAVHFGGK FRIIDFALSN  60
   61 CLNSGIRRIG VITQYQSHTL VQHIQRGWSL FSEEMNEFVD LLPAQQRMKG ENWYRGTADA 120
  121 VTQNLDIIRC YKAEYVVILA GDHIYKQDYS RMLIDHVEKG ARCTVACMPV PIKEATAFGV 180
  181 MAVDENDKII DFVEKPANPP AMPGDASKSL ASMGIYVFDA DYLYELLAAD DKDDASSHDF 240
  241 GKDIIPKITR EGMAYAHPFP LSCVQSDPQA EPYWRDVGTL EAYWKANLDL ASVTPELDMY 300
  301 DQNWPIRTHM ESLPPAKFVQ DRSGSHGMTL NSLVSGGCII SGSVVVQSVL FPRVRINSFC 360
  361 NIDSAVLLPE VWVGRSCRLR RCVIDRACII PEGMVIGENA EEDARRFYRS EEGIVLVTRE 420
  421 MLRKLQVKQE R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.522879
Match:	1yp2A
Description:	Crystal structure of potato tuber ADP-glucose pyrophosphorylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity	2.31513836185329	bayes_pls_golite062009
catalytic activity	2.25720704697246	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.04393180556087	bayes_pls_golite062009
O-acyltransferase activity	1.75961983651531	bayes_pls_golite062009
transferase activity	1.67251862595728	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.51711005399931	bayes_pls_golite062009
cytidylyltransferase activity	1.46439247968206	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	1.21894113759929	bayes_pls_golite062009
glucose-1-phosphate adenylyltransferase activity	1.1107654322416	bayes_pls_golite062009
acyltransferase activity	1.1088759555825	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.10852250644129	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.886009567107207	bayes_pls_golite062009
3-deoxy-manno-octulosonate cytidylyltransferase activity	0.83115346830439	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.696745721981411	bayes_pls_golite062009
nucleotidyltransferase activity	0.67147527259372	bayes_pls_golite062009
uridylyltransferase activity	0.54930147038803	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	0.48277064848483	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.38929738612511	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.280335197569099	bayes_pls_golite062009
glucose-1-phosphate thymidylyltransferase activity	0.204810937394121	bayes_pls_golite062009
guanylyltransferase activity	0.14847697203788	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	0.10541627748542	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: