YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29144218, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29144218, gi|....

Description	E-value	Query Range	Subject Range
gi\|226839140, gi... - gi\|254038634\|ref\|ZP_04872690.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683914... gi\|466602\|gb\|AAB... - overlaps previous ORF, probably uses downstream start [Escherichia coli] gi\|466602 - gi\|466602\|gb\|AAB18441.1\| overlaps previous ORF, probably uses downstream start [Escherichia coli str... tr\|A0A0S1EXW2\|A0... - DUF1145 family protein OS=Escherichia coli (strain K12) GN=yhhL PE=4 SV=1	1.0E-27	[1..90]	[41..130]
gi\|238902557, gi... - gi\|238902557\|ref\|YP_002928353.1\| conserved inner membrane protein [Escherichia coli BW2952], gi\|2388... gi\|253771705, gi... - gi\|253771705\|ref\|YP_003034536.1\| protein of unknown function DUF1145 [Escherichia coli BL21(DE3)], g... EG12212 - DUF1145 family protein / DUF1145 family protein YHHL_ECOLI - Hypothetical protein yhhL - Escherichia coli EG12212 - DUF1145 family protein / DUF1145 family protein gi\|170082980, gi... - gi\|170082980\|ref\|YP_001732300.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|89110546, gi\|... - gi\|89110546\|ref\|AP_004326.1\| conserved inner membrane protein [Escherichia coli str. K-12 substr. W3...	6.0E-24	[2..90]	[1..89]
gi\|227883612, gi... - gi\|227883612\|ref\|ZP_04001417.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783949... gi\|237703213, gi... - gi\|237703213\|ref\|ZP_04533694.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|251786714, gi... - gi\|251786714\|ref\|YP_003001018.1\| hypothetical protein B21_03268 [Escherichia coli BL21], gi\|24237898... gi\|254163390, gi... - gi\|254163390\|ref\|YP_003046498.1\| conserved inner membrane protein [Escherichia coli B str. REL606], ... gi\|82778730, gi\|... - gi\|82778730\|ref\|YP_405079.1\| hypothetical protein SDY_3617 [Shigella dysenteriae Sd197], gi\|81242878... gi\|253979447, gi... - gi\|254290140\|ref\|YP_003055888.1\| conserved inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|82545829, gi\|... - gi\|82545829\|ref\|YP_409776.1\| hypothetical protein SBO_3463 [Shigella boydii Sb227], gi\|81247240\|gb\|A... gi\|254795386, gi... - gi\|254795386\|ref\|YP_003080223.1\| conserved inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|188487190, gi... - gi\|75516069\|ref\|ZP_00738187.1\| COG3776: Predicted membrane protein [Escherichia coli 53638], gi\|1884... gi\|73857543, gi\|... - gi\|74314066\|ref\|YP_312485.1\| hypothetical protein SSON_3704 [Shigella sonnei Ss046], gi\|73857543\|gb\|... gi\|56480350, gi\|... - gi\|56480350\|ref\|NP_709236.2\| hypothetical protein SF3484 [Shigella flexneri 2a str. 301], gi\|5638390... gi\|157162943, gi... - gi\|75197392\|ref\|ZP_00707462.1\| COG3776: Predicted membrane protein [Escherichia coli HS], gi\|1571629... gi\|194426994, gi... - gi\|75211831\|ref\|ZP_00711895.1\| COG3776: Predicted membrane protein [Escherichia coli B171], gi\|19442... gi\|187427092, gi... - gi\|75179911\|ref\|ZP_00699898.1\| COG3776: Predicted membrane protein [Shigella boydii BS512], gi\|18773... gi\|157081339, gi... - gi\|75188238\|ref\|ZP_00701505.1\| COG3776: Predicted membrane protein [Escherichia coli E24377A], gi\|15... gi\|191170386, gi... - gi\|75242737\|ref\|ZP_00726481.1\| COG3776: Predicted membrane protein [Escherichia coli F11], gi\|191170... gi\|193061754, gi... - gi\|75260247\|ref\|ZP_00731515.1\| COG3776: Predicted membrane protein [Escherichia coli E22], gi\|193061... gi\|75227168, gi\|... - gi\|75227168\|ref\|ZP_00713976.1\| COG3776: Predicted membrane protein [Escherichia coli B7A], gi\|191169... gi\|193068755, gi... - gi\|75237065\|ref\|ZP_00721121.1\| COG3776: Predicted membrane protein [Escherichia coli E110019], gi\|19... gi\|168759504, gi... - gi\|189369804\|gb\|EDU88220.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189359293, gi... - gi\|189359293\|gb\|EDU77712.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168772625, gi... - gi\|187771604\|gb\|EDU35448.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168765829, gi... - gi\|189364668\|gb\|EDU83087.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|83571609, gi\|... - gi\|83571609\|ref\|ZP_00923049.1\| COG3776: Predicted membrane protein [Shigella dysenteriae 1012], gi\|1... gi\|168785287, gi... - gi\|189374464\|gb\|EDU92880.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|194435619, gi... - gi\|83588672\|ref\|ZP_00927296.1\| COG3776: Predicted membrane protein [Escherichia coli 101-1], gi\|1944... gi\|124500456, gi... - gi\|124528615\|ref\|ZP_01699893.1\| protein of unknown function DUF1145 [Escherichia coli B], gi\|1245004... gi\|189002273, gi... - gi\|189002273\|gb\|EDU71259.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|169753230, gi... - gi\|170018302\|ref\|YP_001723256.1\| hypothetical protein EcolC_0250 [Escherichia coli ATCC 8739], gi\|16... gi\|168797252, gi... - gi\|189380060\|gb\|EDU98476.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|209755996, gi... - pir\|\|C86014 hypothetical protein yhhL [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15833569, gi\|... - gi\|15833569\|ref\|NP_312342.1\| hypothetical protein ECs4315 [Escherichia coli O157:H7], gi\|13363789\|db... gi\|30065257, gi\|... - gi\|30065257\|ref\|NP_839428.1\| hypothetical protein S4279 [Shigella flexneri 2a str. 2457T], gi\|300435... gi\|12518125, gi\|... - gi\|15803978\|ref\|NP_290014.1\| hypothetical protein Z4840 [Escherichia coli O157:H7 EDL933], gi\|125181... gi\|188018382, gi... - gi\|188018382\|gb\|EDU56504.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|110345298, gi... - gi\|110643706\|ref\|YP_671436.1\| hypothetical protein ECP_3559 [Escherichia coli 536], gi\|110345298\|gb\|... gi\|218372197, gi... - gi\|218702211\|ref\|YP_002409840.1\| hypothetical protein ECIAI39_3947 [Escherichia coli IAI39], gi\|2183... gi\|110807293, gi... - gi\|110807293\|ref\|YP_690813.1\| hypothetical protein SFV_3469 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|218691751, gi... - gi\|218691751\|ref\|YP_002399963.1\| hypothetical protein ECED1_4139 [Escherichia coli ED1a], gi\|2184293... gi\|15833569, gi\|... - gi\|15833569\|ref\|NP_312342.1\| hypothetical protein ECs4315 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|195934960 - gi\|195934960\|ref\|ZP_03080342.1\| hypothetical protein EscherichcoliO157_00640 [Escherichia coli O157:... gi\|170518803, gi... - gi\|170681085\|ref\|YP_001745715.1\| hypothetical protein EcSMS35_3749 [Escherichia coli SMS-3-5], gi\|17... gi\|208813138, gi... - gi\|208813138\|ref\|ZP_03254467.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208728151, gi... - gi\|208808350\|ref\|ZP_03250687.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|209397555, gi... - gi\|209397555\|ref\|YP_002272910.1\| hypothetical protein ECH74115_4786 [Escherichia coli O157:H7 str. E... gi\|208818439, gi... - gi\|208818439\|ref\|ZP_03258759.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|217322297, gi... - gi\|217326076\|ref\|ZP_03442160.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|215488741, gi... - gi\|215488741\|ref\|YP_002331172.1\| hypothetical protein E2348C_3706 [Escherichia coli O127:H6 str. E23...	1.0E-23	[2..90]	[1..89]
gi\|26250081, gi\|... - gi\|26250081\|ref\|NP_756121.1\| hypothetical protein c4259 [Escherichia coli CFT073], gi\|26110510\|gb\|AA... gi\|209914184, gi... - gi\|209920925\|ref\|YP_002295009.1\| hypothetical protein ECSE_3734 [Escherichia coli SE11], gi\|20991418... gi\|91212955, gi\|... - gi\|91212955\|ref\|YP_542941.1\| hypothetical protein UTI89_C3981 [Escherichia coli UTI89], gi\|91074529\|... gi\|24114726, gi\|... - ref\|NP_709236.1\| hypothetical protein SF3484 [Shigella flexneri 2a str. 301], gb\|AAN44943.1\| orf, c...	1.0E-23	[1..90]	[1..90]
gi\|62129705, gi\|... - gi\|62182072\|ref\|YP_218489.1\| hypothetical protein SC3502 [Salmonella enterica subsp. enterica serova... gi\|224469893, gi... - gi\|224585365\|ref\|YP_002639164.1\| hypothetical protein SPC_3642 [Salmonella enterica subsp. enterica ... gi\|199603608, gi... - gi\|200386510\|ref\|ZP_03213122.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197211162, gi... - gi\|197247459\|ref\|YP_002148496.1\| hypothetical protein SeAg_B3775 [Salmonella enterica subsp. enteric... gi\|194450487, gi... - gi\|194450487\|ref\|YP_002047598.1\| hypothetical protein SeHA_C3885 [Salmonella enterica subsp. enteric... gi\|194403328, gi... - gi\|194444665\|ref\|YP_002042818.1\| hypothetical protein SNSL254_A3842 [Salmonella enterica subsp. ente... gi\|168818610, gi... - gi\|205344328\|gb\|EDZ31092.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168465146, gi... - gi\|195632304\|gb\|EDX50788.1\| hypothetical protein SNSL317_A4893 [Salmonella enterica subsp. enterica ... gi\|168260698, gi... - gi\|205350214\|gb\|EDZ36845.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168241725, gi... - gi\|205339002\|gb\|EDZ25766.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167549209, gi... - gi\|205325805\|gb\|EDZ13644.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...	8.0E-23	[2..90]	[1..89]
gi\|206710614, gi... - gi\|207858811\|ref\|YP_002245462.1\| hypothetical protein SEN3396 [Salmonella enterica subsp. enterica s... gi\|205274590, gi... - gi\|205354809\|ref\|YP_002228610.1\| hypothetical protein SG3864 [Salmonella enterica subsp. enterica se... gi\|56129729, gi\|... - gi\|56415472\|ref\|YP_152547.1\| hypothetical protein SPA3424 [Salmonella enterica subsp. enterica serov... gi\|197095878, gi... - gi\|197364401\|ref\|YP_002144038.1\| hypothetical protein SSPA3195 [Salmonella enterica subsp. enterica ...	9.0E-23	[1..90]	[1..90]
gi\|16766859, gi\|... - gi\|16766859\|ref\|NP_462474.1\| hypothetical protein STM3573 [Salmonella typhimurium LT2], gi\|16422133\|... lcl\|NC_016856.1_... - [gene=yhhL] [protein=hypothetical protein] [protein_id=YP_005239785.1] [location=3754628..3754900]	2.0E-22	[1..90]	[1..90]
gi\|36787389, gi\|... - gi\|37527953\|ref\|NP_931298.1\| hypothetical protein plu4106 [Photorhabdus luminescens subsp. laumondii...	4.0E-19	[2..90]	[1..88]
gi\|165912904, gi... - gi\|89104900\|ref\|ZP_01177431.1\| COG3776: Predicted membrane protein [Yersinia pestis biovar Orientali... gi\|167468881 - gi\|167468881\|ref\|ZP_02333585.1\| hypothetical protein YpesF_13514 [Yersinia pestis FV-1] gi\|229839504, gi... - gi\|229839504\|ref\|ZP_04459663.1\| conserved inner membrane protein [Yersinia pestis biovar Orientalis ... gi\|108806204, gi... - gi\|108806204\|ref\|YP_650120.1\| hypothetical protein YPA_0206 [Yersinia pestis Antiqua], gi\|108778117\|... gi\|169752726, gi... - gi\|170026192\|ref\|YP_001722697.1\| hypothetical protein YPK_3981 [Yersinia pseudotuberculosis YPIII], ... gi\|229900067, gi... - gi\|229900067\|ref\|ZP_04515204.1\| conserved inner membrane protein [Yersinia pestis biovar Orientalis ... gi\|77633435, gi\|... - gi\|77633435\|ref\|ZP_00795566.1\| COG3776: Predicted membrane protein [Yersinia pestis Angola], gi\|1624... gi\|108773962, gi... - gi\|229900487\|ref\|ZP_04515616.1\| conserved inner membrane protein [Yersinia pestis Nepal516], gi\|2296... gi\|186893576, gi... - gi\|186893576\|ref\|YP_001870688.1\| hypothetical protein YPTS_0234 [Yersinia pseudotuberculosis PB1/+],... gi\|153948287, gi... - gi\|77630712\|ref\|ZP_00793298.1\| COG3776: Predicted membrane protein [Yersinia pseudotuberculosis IP 3... gi\|165989391, gi... - gi\|166011622\|ref\|ZP_02232520.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166213627, gi... - gi\|166213627\|ref\|ZP_02239662.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166961064, gi... - gi\|167420935\|ref\|ZP_02312688.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167054786, gi... - gi\|167426267\|ref\|ZP_02318020.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|25511285 - pir\|\|AH0464 probable membrane protein YPO3816a [imported] - Yersinia pestis (strain CO92) gi\|45437851, gi\|... - gi\|45442984\|ref\|NP_994523.1\| hypothetical protein YP_3232 [Yersinia pestis biovar Microtus str. 9100... gi\|22124329, gi\|... - gi\|22124329\|ref\|NP_667752.1\| hypothetical protein y0414 [Yersinia pestis KIM], gi\|21957104\|gb\|AAM840... gi\|115349430, gi... - gi\|218930819\|ref\|YP_002348694.1\| hypothetical protein YPO3816a [Yersinia pestis CO92], gi\|16123951\|r... Q66FW6\|Q66FW6_YERPS - Putative membrane protein - Yersinia pseudotuberculosis gi\|51587856, gi\|... - gi\|51594574\|ref\|YP_068765.1\| hypothetical protein YPTB0219 [Yersinia pseudotuberculosis IP 32953], g... gi\|153997126, gi... - gi\|153997126\|ref\|ZP_02022259.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149289432\|... gi\|145600683, gi... - gi\|145600683\|ref\|YP_001164759.1\| hypothetical protein YPDSF_3433 [Yersinia pestis Pestoides F], gi\|1... gi\|229837144, gi... - gi\|229837144\|ref\|ZP_04457309.1\| conserved inner membrane protein [Yersinia pestis Pestoides A], gi\|2...	2.0E-18	[2..86]	[1..84]
gi\|77978512 - gi\|77978512\|ref\|ZP_00833940.1\| COG3776: Predicted membrane protein [Yersinia intermedia ATCC 29909]	2.0E-18	[2..86]	[1..84]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLINLGRLL MLFVWAFLIL NLVHPFPRPL NIFVNVALVF MALMHGMQLA LLKSTIPKAG  60
   61 PQMTTGEKIR IFLFSVFELL VWQKKFKNKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.619789
Match:	PF06611.3
Description:	No description for PF06611.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits