YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29139771, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29139771, gi|....

Description	E-value	Query Range	Subject Range
gi\|56415556, gi\|... - gi\|56415556\|ref\|YP_152631.1\| hypothetical protein SPA3514 [Salmonella enterica subsp. enterica serov... gi\|197364483, gi... - gi\|197364483\|ref\|YP_002144120.1\| hypothetical protein SSPA3281 [Salmonella enterica subsp. enterica ...	1.0E-76	[1..274]	[1..274]
gi\|205354731, gi... - gi\|205354731\|ref\|YP_002228532.1\| hypothetical protein SG3769 [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=bax] [protein=hypothetical protein] [protein_id=YP_005239898.1] [location=complement(3863082..... gi\|16766948, gi\|... - gi\|16766948\|ref\|NP_462563.1\| hypothetical protein STM3663 [Salmonella typhimurium LT2], gi\|16422227\|... gi\|206710703, gi... - gi\|207858900\|ref\|YP_002245551.1\| hypothetical protein SEN3485 [Salmonella enterica subsp. enterica s...	2.0E-76	[1..274]	[1..274]
gi\|62182168, gi\|... - gi\|62182168\|ref\|YP_218585.1\| hypothetical protein SC3598 [Salmonella enterica subsp. enterica serova... gi\|224469990, gi... - gi\|224585462\|ref\|YP_002639261.1\| putative exported amidase [Salmonella enterica subsp. enterica sero...	3.0E-76	[1..274]	[1..274]
gi\|209921037, gi... - gi\|209921037\|ref\|YP_002295121.1\| hypothetical protein ECSE_3846 [Escherichia coli SE11], gi\|20991429... gi\|194425376, gi... - gi\|194435833\|ref\|ZP_03067936.1\| protein bax [Escherichia coli 101-1], gi\|194425376\|gb\|EDX41360.1\| pr... gi\|218556131, gi... - gi\|218556131\|ref\|YP_002389044.1\| hypothetical protein ECIAI1_3736 [Escherichia coli IAI1], gi\|218362... gi\|215488855, gi... - gi\|215488855\|ref\|YP_002331286.1\| hypothetical protein E2348C_3822 [Escherichia coli O127:H6 str. E23... gi\|192932639, gi... - gi\|193061849\|ref\|ZP_03042946.1\| protein bax [Escherichia coli E22], gi\|192932639\|gb\|EDV85236.1\| prot... gi\|191170312, gi... - gi\|191170312\|ref\|ZP_03031865.1\| protein bax [Escherichia coli F11], gi\|190909120\|gb\|EDV68706.1\| prot... gi\|194414524, gi... - gi\|194427484\|ref\|ZP_03060033.1\| protein bax [Escherichia coli B171], gi\|194414524\|gb\|EDX30797.1\| pro... gi\|193068509, gi... - gi\|193068509\|ref\|ZP_03049471.1\| protein bax [Escherichia coli E110019], gi\|192958160\|gb\|EDV88601.1\| ... gi\|124501558, gi... - gi\|124526864\|ref\|ZP_01698746.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Escherichia c... gi\|170083079, gi... - gi\|170083079\|ref\|YP_001732399.1\| hypothetical protein ECDH10B_3751 [Escherichia coli str. K-12 subst... gi\|91213084, gi\|... - gi\|91213084\|ref\|YP_543070.1\| hypothetical protein UTI89_C4111 [Escherichia coli UTI89], gi\|91074658\|... gi\|117625853, gi... - gi\|117625853\|ref\|YP_859176.1\| hypothetical protein APECO1_2880 [Escherichia coli APEC O1], gi\|115514... gi\|170018199, gi... - gi\|170018199\|ref\|YP_001723153.1\| hypothetical protein EcolC_0144 [Escherichia coli ATCC 8739], gi\|16... gi\|110345410, gi... - gi\|110643818\|ref\|YP_671548.1\| hypothetical protein ECP_3673 [Escherichia coli 536], gi\|110345410\|gb\|... gi\|188493844, gi... - gi\|188493844\|ref\|ZP_03001114.1\| protein bax [Escherichia coli 53638], gi\|188489043\|gb\|EDU64146.1\| pr... gi\|110617311, gi... - gi\|110807763\|ref\|YP_691283.1\| hypothetical protein SFV_3970 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|187733519, gi... - gi\|187733519\|ref\|YP_001882234.1\| protein bax [Shigella boydii CDC 3083-94], gi\|187430511\|gb\|ACD09785... gi\|227883738, gi... - gi\|227883738\|ref\|ZP_04001543.1\| protein bax [Escherichia coli 83972], gi\|227839318\|gb\|EEJ49784.1\| pr... gi\|242379088, gi... - gi\|251786815\|ref\|YP_003001119.1\| hypothetical protein B21_03373 [Escherichia coli BL21], gi\|24237908... gi\|254290244, gi... - gi\|254290244\|ref\|YP_003055992.1\| hypothetical protein ECD_03422 [Escherichia coli BL21(DE3)], gi\|253... gi\|237703342, gi... - gi\|237703342\|ref\|ZP_04533823.1\| BAX protein [Escherichia sp. 3_2_53FAA], gi\|226902606\|gb\|EEH88865.1\|... gi\|238902660, gi... - gi\|238902660\|ref\|YP_002928456.1\| hypothetical protein BWG_3260 [Escherichia coli BW2952], gi\|2388603... gi\|218691859, gi... - gi\|218691859\|ref\|YP_002400071.1\| hypothetical protein ECED1_4257 [Escherichia coli ED1a], gi\|2184294... gi\|81247352, gi\|... - gi\|82545941\|ref\|YP_409888.1\| hypothetical protein SBO_3578 [Shigella boydii Sb227], gi\|81247352\|gb\|A... gi\|157068727, gi... - gi\|157163047\|ref\|YP_001460365.1\| hypothetical protein EcHS_A3773 [Escherichia coli HS], gi\|157068727... gi\|218367416, gi... - gi\|218560647\|ref\|YP_002393560.1\| hypothetical protein ECS88_3989 [Escherichia coli S88], gi\|21836741... gi\|89110442, gi\|... - gi\|89110442\|ref\|AP_004222.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|218707205, gi... - gi\|218707205\|ref\|YP_002414724.1\| hypothetical protein ECUMN_4082 [Escherichia coli UMN026], gi\|21843... gi\|254163494, gi... - gi\|254163494\|ref\|YP_003046602.1\| hypothetical protein ECB_03422 [Escherichia coli B str. REL606], gi... gi\|218372322, gi... - gi\|218702336\|ref\|YP_002409965.1\| hypothetical protein ECIAI39_4082 [Escherichia coli IAI39], gi\|2183... EG11360 - putative glucosaminidase / Predicted glucosaminidase, function unknown BAX_ECOLI - Protein bax - Escherichia coli EG11360 - putative glucosaminidase / Predicted glucosaminidase, function unknown gi\|26110641, gi\|... - gi\|26250212\|ref\|NP_756252.1\| hypothetical protein c4390 [Escherichia coli CFT073], gi\|26110641\|gb\|AA...	4.0E-73	[1..274]	[1..274]
gi\|81242959, gi\|... - gi\|82778811\|ref\|YP_405160.1\| hypothetical protein SDY_3709 [Shigella dysenteriae Sd197], gi\|81242959...	7.0E-73	[1..274]	[1..274]
gi\|254594927, gi... - gi\|254795527\|ref\|YP_003080364.1\| hypothetical protein ECSP_4566 [Escherichia coli O157:H7 str. TW143... gi\|13363927, gi\|... - gi\|15833707\|ref\|NP_312480.1\| putative ATP-binding protein [Escherichia coli O157:H7], gi\|13363927\|db... gi\|209755090, gi... - pir\|\|C86032 probable ATP-binding protein bax [imported] - Escherichia coli (strain O157:H7, substrai... gi\|15804116, gi\|... - gi\|15804116\|ref\|NP_290155.1\| hypothetical protein Z4995 [Escherichia coli O157:H7 EDL933], gi\|125183... gi\|13363927, gi\|... - gi\|15833707\|ref\|NP_312480.1\| hypothetical protein ECs4453 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|217322613, gi... - gi\|217326392\|ref\|ZP_03442476.1\| protein bax [Escherichia coli O157:H7 str. TW14588], gi\|217322613\|gb... gi\|209397567, gi... - gi\|209397567\|ref\|YP_002273056.1\| protein bax [Escherichia coli O157:H7 str. EC4115], gi\|209158967\|gb... gi\|189404684, gi... - gi\|189404684\|ref\|ZP_02810449.2\| protein bax [Escherichia coli O157:H7 str. EC869], gi\|189374408\|gb\|E... gi\|189403714, gi... - gi\|189403714\|ref\|ZP_02784669.2\| protein bax [Escherichia coli O157:H7 str. EC4501], gi\|189369722\|gb\|... gi\|189402754, gi... - gi\|189402754\|ref\|ZP_02790992.2\| protein bax [Escherichia coli O157:H7 str. EC4486], gi\|189364640\|gb\|... gi\|189401875, gi... - gi\|189401875\|ref\|ZP_02778397.2\| protein bax [Escherichia coli O157:H7 str. EC4401], gi\|189359316\|gb\|... gi\|208819892, gi... - gi\|208819892\|ref\|ZP_03260212.1\| protein bax [Escherichia coli O157:H7 str. EC4042], gi\|208740015\|gb\|... gi\|208814425, gi... - gi\|208814425\|ref\|ZP_03255754.1\| protein bax [Escherichia coli O157:H7 str. EC4045], gi\|208735702\|gb\|... gi\|208806339, gi... - gi\|208806339\|ref\|ZP_03248676.1\| protein bax [Escherichia coli O157:H7 str. EC4206], gi\|208726140\|gb\|... gi\|189405521, gi... - gi\|189405521\|ref\|ZP_02822415.2\| protein bax [Escherichia coli O157:H7 str. EC508], gi\|189380150\|gb\|E... gi\|189010123, gi... - gi\|189010123\|ref\|ZP_02804728.2\| protein bax [Escherichia coli O157:H7 str. EC4076], gi\|189002549\|gb\|... gi\|188024509, gi... - gi\|188024509\|ref\|ZP_02771906.2\| protein bax [Escherichia coli O157:H7 str. EC4113], gi\|188018377\|gb\|... gi\|187775699, gi... - gi\|187775699\|ref\|ZP_02797475.2\| protein bax [Escherichia coli O157:H7 str. EC4196], gi\|187771734\|gb\|...	7.0E-73	[1..274]	[1..274]
gi\|24114845, gi\|... - gi\|24114845\|ref\|NP_709355.1\| hypothetical protein SF3614 [Shigella flexneri 2a str. 301], gi\|2405407... gi\|30065145, gi\|... - gi\|30065145\|ref\|NP_839316.1\| hypothetical protein S4155 [Shigella flexneri 2a str. 2457T], gi\|300434...	1.0E-72	[1..274]	[1..274]
gi\|16131441\|ref\|... - putative ATP-binding protein [Escherichia coli K12], putative ATP-binding protein [Escherichia coli ... gi\|466708\|gb\|AAB... - unnamed protein product [Escherichia coli] gi\|466708, gi\|10... - gi\|466708\|gb\|AAB18547.1\| unnamed protein product [Escherichia coli str. K-12 substr. MG1655], pir\|\|S...	6.0E-72	[1..274]	[1..274]
gi\|24348321, gi\|... - gi\|24373899\|ref\|NP_717942.1\| bax protein, putative [Shewanella oneidensis MR-1], gi\|24348321\|gb\|AAN5... SO2352 - bax protein putative	5.0E-50	[46..270]	[18..250]
gi\|89953152, gi\|... - gi\|90023552\|ref\|YP_529379.1\| hypothetical protein Sde_3912 [Saccharophagus degradans 2-40], gi\|89953...	6.0E-49	[37..270]	[58..295]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILTPMRRYG AMILMLLTIA FSGEVLAKTR ATQTSQKSHI TETSYKQVSS KQEYSRNSAK  60
   61 SSSLPDLRKY PSGTPRKKAF LRTVMPYITS QNAAITADRN WLISKQYQNR WSPSERARMK 120
  121 DIAKRY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.601	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.472	a.118.1	ARM repeat
View	Download	0.375	d.218.1	Nucleotidyltransferase
View	Download	0.368	d.218.1	Nucleotidyltransferase
View	Download	0.361	d.8.1	Urease, gamma-subunit

Predicted Domain #2

Region A:
Residues: [127-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVSWSGNTRR IPWNTLLERV DIIPTSMVAT MAAAESGWGT SKLARSNNNL FGMKCTKGRC  60
   61 TNTPGKVKGY SQFASVEESV SAYVANLNTH PAYSSFRKSR AQLRKADQEV TATAMIHKLK 120
  121 GYSTQGARYN NYLFAMYQDN QRLIAAHM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.04
Match:	1gbsA
Description:	CRYSTAL STRUCTURE OF BLACK SWAN GOOSE-TYPE LYSOZYME AT 1.8 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.936204440471049	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: