YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29139638, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29139638, gi|....

Description	E-value	Query Range	Subject Range
gi\|110635080, gi... - gi\|69276655\|ref\|ZP_00612249.1\| Heat shock protein Hsp20 [Mesorhizobium sp. BNC1], gi\|68192561\|gb\|EAN...	2.0E-33	[1..136]	[15..152]
gi\|86574659, gi\|... - gi\|86751631\|ref\|YP_488127.1\| heat shock protein Hsp20 [Rhodopseudomonas palustris HaA2], gi\|86574659...	3.0E-33	[1..137]	[1..139]
gi\|78514481, gi\|... - gi\|78697663\|ref\|ZP_00862169.1\| small heat shock protein [Bradyrhizobium sp. BTAi1], gi\|78514481\|gb\|E...	1.0E-32	[1..137]	[1..139]
gi\|213423547 - gi\|213423547\|ref\|ZP_03356527.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|213163790 - gi\|213163790\|ref\|ZP_03349500.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|206710837, gi... - gi\|207859034\|ref\|YP_002245685.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serova... gi\|204928701, gi... - gi\|204928701\|ref\|ZP_03219900.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica s... gi\|200388470, gi... - gi\|200388470\|ref\|ZP_03215082.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica s... gi\|197939334, gi... - gi\|198244818\|ref\|YP_002217757.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica ... gi\|197240451, gi... - gi\|197262196\|ref\|ZP_03162270.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica s... gi\|197248828, gi... - gi\|197248828\|ref\|YP_002148746.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica ... gi\|194470189, gi... - gi\|194470189\|ref\|ZP_03076173.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica s... gi\|194448742, gi... - gi\|194448742\|ref\|YP_002047840.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serova... gi\|194403692, gi... - gi\|194445029\|ref\|YP_002043057.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica ... gi\|205344457, gi... - gi\|205344457\|gb\|EDZ31221.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica serov... gi\|168260412, gi... - gi\|205350286\|gb\|EDZ36917.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica serov... gi\|205339039, gi... - gi\|205339039\|gb\|EDZ25803.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica serov... gi\|168235444, gi... - gi\|197291319\|gb\|EDY30671.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica serov... gi\|205332532, gi... - gi\|205332532\|gb\|EDZ19296.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica serov... gi\|224585609, gi... - gi\|224585609\|ref\|YP_002639408.1\| heat shock protein A [Salmonella enterica subsp. enterica serovar P... gi\|214001475 - gi\|214001475\|ref\|ZP_03412210.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|213850309 - gi\|213850309\|ref\|ZP_03381207.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|213649776 - gi\|213649776\|ref\|ZP_03379829.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|213621959 - gi\|213621959\|ref\|ZP_03374742.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|213579708 - gi\|213579708\|ref\|ZP_03361534.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|213426322 - gi\|213426322\|ref\|ZP_03359072.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|205329404, gi... - gi\|205329404\|gb\|EDZ16168.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica serov... gi\|205325556, gi... - gi\|205325556\|gb\|EDZ13395.1\| small heat shock protein IbpA [Salmonella enterica subsp. enterica serov... gi\|238910146 - gi\|238910146\|ref\|ZP_04653983.1\| heat shock protein IbpA [Salmonella enterica subsp. enterica serovar... gi\|39546376 - gi\|39546376\|ref\|NP_462709.2\| heat shock protein IbpA [Salmonella typhimurium LT2] lcl\|NC_016856.1_... - [gene=ibpA] [protein=heat shock protein IbpA] [protein_id=YP_005240074.1] [location=complement(40236...	2.0E-32	[1..137]	[3..139]
gi\|59710620, gi\|... - gi\|59710620\|ref\|YP_203396.1\| heat shock chaperone [Vibrio fischeri ES114], gi\|59478721\|gb\|AAW84508.1... gi\|197334199, gi... - gi\|197334199\|ref\|YP_002154785.1\| small heat shock protein [Vibrio fischeri MJ11], gi\|197315689\|gb\|AC...	3.0E-32	[1..137]	[1..137]
hspD - hspD small heat shock protein 986719:987195 forward MW:17205 gi\|192289385, gi... - gi\|192289385\|ref\|YP_001989990.1\| heat shock protein Hsp20 [Rhodopseudomonas palustris TIE-1], gi\|192...	5.0E-32	[1..137]	[1..139]
gi\|54307290, gi\|... - gi\|54307290\|ref\|YP_128310.1\| putative 16kDa heat shock protein A [Photobacterium profundum SS9], gi\|...	7.0E-32	[1..137]	[1..137]
gi\|27382851, gi\|... - gi\|27382851\|ref\|NP_774380.1\| small heat shock protein [Bradyrhizobium japonicum USDA 110], gi\|273560...	1.0E-31	[1..137]	[6..143]
gi\|75231044, gi\|... - gi\|75231044\|ref\|ZP_00717479.1\| COG0071: Molecular chaperone (small heat shock protein) [Escherichia ... IBPA_ECOLC - Small heat shock protein IbpA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ibpA PE=... gi\|192957539, gi... - gi\|75236411\|ref\|ZP_00720507.1\| COG0071: Molecular chaperone (small heat shock protein) [Escherichia ... gi\|188016880, gi... - gi\|188016880\|gb\|EDU55002.1\| small heat shock protein IbpA [Escherichia coli O157:H7 str. EC4113], gi... IBPA_ECOHS - Small heat shock protein IbpA OS=Escherichia coli O9:H4 (strain HS) GN=ibpA PE=3 SV=1 gi\|168753579, gi... - gi\|189358877\|gb\|EDU77296.1\| small heat shock protein IbpA [Escherichia coli O157:H7 str. EC4401], gi... gi\|75210701, gi\|... - gi\|75210701\|ref\|ZP_00710842.1\| COG0071: Molecular chaperone (small heat shock protein) [Escherichia ... gi\|15833881, gi\|... - gi\|15833881\|ref\|NP_312654.1\| heat shock protein IbpA [Escherichia coli O157:H7 str. Sakai], gi\|13364... gi\|168759877, gi... - gi\|189369803\|gb\|EDU88219.1\| small heat shock protein IbpA [Escherichia coli O157:H7 str. EC4501], gi... gi\|75514250, gi\|... - gi\|75514250\|ref\|ZP_00736558.1\| COG0071: Molecular chaperone (small heat shock protein) [Escherichia ... gi\|189364808, gi... - gi\|189364808\|gb\|EDU83227.1\| small heat shock protein IbpA [Escherichia coli O157:H7 str. EC4486], gi... IBPA_SHISS - Small heat shock protein IbpA OS=Shigella sonnei (strain Ss046) GN=ibpA PE=3 SV=1 gi\|187771666, gi... - gi\|187771666\|gb\|EDU35510.1\| small heat shock protein IbpA [Escherichia coli O157:H7 str. EC4196], gi... gi\|191170382, gi... - gi\|75242523\|ref\|ZP_00726267.1\| COG0071: Molecular chaperone (small heat shock protein) [Escherichia ... gi\|168779912, gi... - gi\|189002384\|gb\|EDU71370.1\| small heat shock protein IbpA [Escherichia coli O157:H7 str. EC4076], gi... gi\|75258227, gi\|... - gi\|75258227\|ref\|ZP_00729675.1\| COG0071: Molecular chaperone (small heat shock protein) [Escherichia ... IBPA_ECOK1 - Small heat shock protein IbpA OS=Escherichia coli O1:K1 / APEC GN=ibpA PE=3 SV=1 gi\|189374386, gi... - gi\|189374386\|gb\|EDU92802.1\| small heat shock protein IbpA [Escherichia coli O157:H7 str. EC869], gi\|... gi\|124529034, gi... - gi\|124529034\|ref\|ZP_01700180.1\| heat shock protein Hsp20 [Escherichia coli B], gi\|124500173\|gb\|EAY47... IBPA_SHIB3 - Small heat shock protein IbpA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ibpA PE... IBPA_ECOL5 - Small heat shock protein IbpA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ibpA PE=3 SV=1 IBPA_ECO24 - Small heat shock protein IbpA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ibpA PE=3 SV=1 IBPA_SHIF8 - Small heat shock protein IbpA OS=Shigella flexneri serotype 5b (strain 8401) GN=ibpA PE=3 SV=1 gi\|83571483, gi\|... - gi\|83571483\|ref\|ZP_00922923.1\| COG0071: Molecular chaperone (small heat shock protein) [Shigella dys... gi\|194425223, gi... - gi\|83588447\|ref\|ZP_00927071.1\| COG0071: Molecular chaperone (small heat shock protein) [Escherichia ... IBPA_ECO5E - Small heat shock protein IbpA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ibpA PE=3 SV=1 IBPA_ECOSE - Small heat shock protein IbpA OS=Escherichia coli (strain SE11) GN=ibpA PE=3 SV=1 IBPA_ECO27 - Small heat shock protein IbpA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ibpA PE=3 SV=1 gi\|217325356, gi... - gi\|217325356\|ref\|ZP_03441440.1\| small heat shock protein IbpA [Escherichia coli O157:H7 str. TW14588... IBPA_ECOL6 - Small heat shock protein ibpA OS=Escherichia coli O6 GN=ibpA PE=3 SV=1 IBPA_ESCF3 - Small heat shock protein IbpA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73... IBPA_ECO8A - Small heat shock protein IbpA OS=Escherichia coli O8 (strain IAI1) GN=ibpA PE=3 SV=1 IBPA_ECO45 - Small heat shock protein IbpA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ibpA PE=3 SV=1 IBPA_ECO81 - Small heat shock protein IbpA OS=Escherichia coli O81 (strain ED1a) GN=ibpA PE=3 SV=1 gi\|189378786, gi... - gi\|189378786\|gb\|EDU97202.1\| small heat shock protein IbpA [Escherichia coli O157:H7 str. EC508], gi\|... IBPA_ECODH - Small heat shock protein IbpA OS=Escherichia coli (strain K12 / DH10B) GN=ibpA PE=3 SV=1 IBPA_ECOSM - Small heat shock protein IbpA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ibpA PE=3 SV=1 gi\|170124536, gi... - gi\|170767098\|ref\|ZP_02901551.1\| small heat shock protein IbpA [Escherichia albertii TW07627], gi\|170... gi\|195936312 - gi\|195936312\|ref\|ZP_03081694.1\| heat shock protein IbpA [Escherichia coli O157:H7 str. EC4024] sp\|B7UMF4\|IBPA_ECO27 - Small heat shock protein ibpA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ibpA PE=3 SV=1 gi\|208728400, gi... - gi\|208808599\|ref\|ZP_03250936.1\| small heat shock protein IbpA [Escherichia coli O157:H7 str. EC4206]... gi\|208812952, gi... - gi\|208812952\|ref\|ZP_03254281.1\| small heat shock protein IbpA [Escherichia coli O157:H7 str. EC4045]... gi\|208821460, gi... - gi\|208821460\|ref\|ZP_03261780.1\| small heat shock protein IbpA [Escherichia coli O157:H7 str. EC4042]... IBPA_SHIFL - Small heat shock protein IbpA OS=Shigella flexneri GN=ibpA PE=3 SV=1 gi\|30043258, gi\|... - gi\|30064997\|ref\|NP_839168.1\| heat shock protein IbpA [Shigella flexneri 2a str. 2457T], gi\|30043258\|... IBPA_ECO57 - Small heat shock protein IbpA OS=Escherichia coli O157:H7 GN=ibpA PE=3 SV=1 EG11534 - heat shock chaperone / Chaperone, heat-inducible protein of HSP20 family gi\|15804286, gi\|... - gi\|15804286\|ref\|NP_290325.1\| heat shock protein IbpA [Escherichia coli O157:H7 EDL933], gi\|12518528\|... gi\|254595095, gi... - gi\|254795695\|ref\|YP_003080532.1\| heat shock chaperone [Escherichia coli O157:H7 str. TW14359], gi\|25... gi\|254163638, gi... - gi\|254163638\|ref\|YP_003046746.1\| heat shock chaperone [Escherichia coli B str. REL606], gi\|253975539... gi\|253322495, gi... - gi\|254290388\|ref\|YP_003056136.1\| heat shock chaperone [Escherichia coli BL21(DE3)], gi\|253979695\|gb\|... gi\|242379226, gi... - gi\|251786953\|ref\|YP_003001257.1\| hypothetical protein B21_03514 [Escherichia coli BL21], gi\|24237922... IBPA_ECOBW - Small heat shock protein IbpA OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=ibpA PE=3 SV=1 IBPA_ECOL6 - Small heat shock protein IbpA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ibpA... gi\|227839185, gi... - gi\|227883907\|ref\|ZP_04001712.1\| possible chaperone IbpA (alternates HslT, HtpN) [Escherichia coli 83... IBPA_ECOLI - Small heat shock protein ibpA (16 kDa heat shock protein A) - Escherichia coli EG11534 - heat shock chaperone / Chaperone, heat-inducible protein of HSP20 family IBPA_ECO55 - Small heat shock protein IbpA OS=Escherichia coli (strain 55989 / EAEC) GN=ibpA PE=3 SV=1 IBPA_ECO7I - Small heat shock protein IbpA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ibpA PE=3 SV=1 IBPA_ECOLU - Small heat shock protein IbpA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ibpA PE=3 S... gi\|147369, gi\|89... - gi\|89110326\|ref\|AP_004106.1\| heat shock chaperone [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|56480415, gi\|... - gi\|56480415\|ref\|NP_709511.2\| heat shock protein IbpA [Shigella flexneri 2a str. 301], gi\|56383966\|gb... IBPA_SHIDS - Small heat shock protein IbpA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ibpA PE=3 SV=1 IBPA_SHIBS - Small heat shock protein IbpA OS=Shigella boydii serotype 4 (strain Sb227) GN=ibpA PE=3 SV=1	1.0E-31	[1..137]	[1..137]
gi\|14023412, gi\|... - gi\|14023412\|dbj\|BAB50018.1\| small heat shock protein [Mesorhizobium loti MAFF303099], gi\|13472665\|re...	1.0E-31	[1..136]	[1..139]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNFDLSPLY RSAIGFDRLF NLLENNQSQS NGGYPPYNVE LVDENHYRIA IAVAGFAESE  60
   61 LEITAQDNLL VVKGAHADEQ KERTYLYQGI AERNFERKFQ LAENIHVRGA NLVNGLLYIE 120
  121 LERVIPEANK PRRIEIN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.30103
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.20758866613061	bayes_pls_golite062009
catalytic activity	0.63074808892513	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: