YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29144001, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29144001, gi|....

Description	E-value	Query Range	Subject Range
lcl\|NC_016856.1_... - [gene=yidQ] [protein=hypothetical protein] [protein_id=YP_005240076.1] [location=4024328..4024663] gi\|162139525 - gi\|162139525\|ref\|YP_218720.2\| hypothetical protein SC3733 [Salmonella enterica subsp. enterica serov... gi\|16767095, gi\|... - gi\|16767095\|ref\|NP_462710.1\| hypothetical protein STM3810 [Salmonella typhimurium LT2], gi\|16422382\|...	4.0E-46	[1..111]	[1..111]
gi\|56129948, gi\|... - gi\|56415691\|ref\|YP_152766.1\| hypothetical protein SPA3660 [Salmonella enterica subsp. enterica serov... gi\|197364618, gi... - gi\|197364618\|ref\|YP_002144255.1\| hypothetical protein SSPA3418 [Salmonella enterica subsp. enterica ...	3.0E-45	[1..111]	[1..111]
gi\|226838870, gi... - gi\|254038905\|ref\|ZP_04872957.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683887... gi\|253322494, gi... - gi\|253771450\|ref\|YP_003034281.1\| protein of unknown function DUF1375 [Escherichia coli BL21(DE3)], g... gi\|7466670, gi\|2... - pir\|\|A65171 o135 protein - Escherichia coli (strain K-12), gi\|290537\|gb\|AAA62040.1\| o135, gi\|155296... gi\|188493928, gi... - gi\|188493928\|ref\|ZP_03001198.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848912... gi\|30043259, gi\|... - gi\|30064998\|ref\|NP_839169.1\| hypothetical protein S3995 [Shigella flexneri 2a str. 2457T], gi\|300432... gi\|110807619, gi... - gi\|110807619\|ref\|YP_691139.1\| hypothetical protein SFV_3823 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|209921165, gi... - gi\|209921165\|ref\|YP_002295249.1\| hypothetical protein ECSE_3974 [Escherichia coli SE11], gi\|20991442... gi\|170018076, gi... - gi\|170018076\|ref\|YP_001723030.1\| hypothetical protein EcolC_0015 [Escherichia coli ATCC 8739], gi\|16... gi\|187734170, gi... - gi\|187734170\|ref\|YP_001882472.1\| hypothetical protein SbBS512_E4231 [Shigella boydii CDC 3083-94], g... gi\|16131556, gi\|... - gb\|AAC76711.1\| orf, hypothetical protein; conserved hypothetical protein [Escherichia coli K12], gi... gi\|124529035, gi... - gi\|124529035\|ref\|ZP_01700181.1\| protein of unknown function DUF1375 [Escherichia coli B], gi\|1245001... gi\|157068847, gi... - gi\|157163167\|ref\|YP_001460485.1\| hypothetical protein EcHS_A3900 [Escherichia coli HS], gi\|157068847... gi\|157080570, gi... - gi\|157158540\|ref\|YP_001465172.1\| hypothetical protein EcE24377A_4197 [Escherichia coli E24377A], gi\|... gi\|56480414, gi\|... - gi\|56480414\|ref\|NP_709510.2\| hypothetical protein SF3775 [Shigella flexneri 2a str. 301], gi\|5638396...	6.0E-45	[1..109]	[25..133]
gi\|25359058, gi\|... - pir\|\|F86053 hypothetical protein yidQ [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15804287, gi\|... - gi\|15804287\|ref\|NP_290326.1\| hypothetical protein Z5184 [Escherichia coli O157:H7 EDL933], gi\|125185... gi\|13364103, gi\|... - gi\|15833882\|ref\|NP_312655.1\| hypothetical protein ECs4628 [Escherichia coli O157:H7], gi\|13364103\|db... gi\|13364103, gi\|... - gi\|15833882\|ref\|NP_312655.1\| hypothetical protein ECs4628 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|73857481, gi\|... - gi\|74314004\|ref\|YP_312423.1\| hypothetical protein SSON_3639 [Shigella sonnei Ss046], gi\|73857481\|gb\|...	7.0E-45	[1..109]	[25..133]
gi\|26110859, gi\|... - gi\|26250429\|ref\|NP_756469.1\| Hypothetical protein yidQ precursor [Escherichia coli CFT073], gi\|26110...	1.0E-44	[1..109]	[25..133]
gi\|82546042, gi\|... - gi\|82546042\|ref\|YP_409989.1\| hypothetical protein SBO_3683 [Shigella boydii Sb227], gi\|81247453\|gb\|A...	2.0E-44	[1..109]	[25..133]
gi\|237703487, gi... - gi\|237703487\|ref\|ZP_04533968.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91213211, gi\|... - gi\|91213211\|ref\|YP_543197.1\| hypothetical protein YidQ precursor [Escherichia coli UTI89], gi\|910747... gi\|115515088, gi... - gi\|117625964\|ref\|YP_859287.1\| hypothetical protein APECO1_2769 [Escherichia coli APEC O1], gi\|115515...	3.0E-44	[1..109]	[25..133]
gi\|89110325, gi\|... - gi\|89110325\|ref\|AP_004105.1\| conserved outer membrane protein [Escherichia coli str. K-12 substr. W3... YIDQ_ECOLI - Hypothetical protein yidQ precursor - Escherichia coli gi\|253975540, gi... - gi\|254163639\|ref\|YP_003046747.1\| conserved outer membrane protein [Escherichia coli B str. REL606], ... EG11712 - DUF1375 family outer membrane protein / Probable lipoprotein, function unknown; Cys conserved gi\|254290389, gi... - gi\|254290389\|ref\|YP_003056137.1\| conserved outer membrane protein [Escherichia coli BL21(DE3)], gi\|2... EG11712 - DUF1375 family outer membrane protein / Probable lipoprotein, function unknown; Cys conserved gi\|161485826, gi... - ref\|NP_709510.1\| hypothetical protein SF3775 [Shigella flexneri 2a str. 301], gb\|AAN45217.1\| orf, c... YIDQ_SHIFL - Uncharacterized protein YidQ OS=Shigella flexneri GN=yidQ PE=3 SV=1 gi\|218363022, gi... - gi\|218556253\|ref\|YP_002389167.1\| hypothetical protein ECIAI1_3866 [Escherichia coli IAI1], gi\|218363... gi\|218358760, gi... - gi\|218551218\|ref\|YP_002385010.1\| hypothetical protein EFER_3983 [Escherichia fergusonii ATCC 35469],... gi\|218707334, gi... - gi\|218707334\|ref\|YP_002414853.1\| hypothetical protein ECUMN_4219 [Escherichia coli UMN026], gi\|21843... gi\|218354142, gi... - gi\|218697410\|ref\|YP_002405077.1\| hypothetical protein EC55989_4157 [Escherichia coli 55989], gi\|2183... gi\|169891027, gi... - gi\|170083192\|ref\|YP_001732512.1\| outer membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|161486397 - gi\|161486397\|ref\|NP_839169.2\| hypothetical protein S3995 [Shigella flexneri 2a str. 2457T] gi\|238860263, gi... - gi\|238902778\|ref\|YP_002928574.1\| conserved outer membrane protein [Escherichia coli BW2952], gi\|2388... gi\|251786954, gi... - gi\|251786954\|ref\|YP_003001258.1\| hypothetical protein B21_03515 [Escherichia coli BL21], gi\|24237922...	5.0E-44	[2..109]	[1..108]
gi\|82779222, gi\|... - gi\|82779222\|ref\|YP_405571.1\| hypothetical protein SDY_4174 [Shigella dysenteriae Sd197], gi\|81243370...	5.0E-44	[1..109]	[25..133]
gi\|110644031, gi... - gi\|110644031\|ref\|YP_671761.1\| hypothetical protein ECP_3889 [Escherichia coli 536], gi\|110345623\|gb\|...	9.0E-44	[1..109]	[25..133]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIKNVWLTL IIWNGMLLLG GCSSVMSHTG GKEGTYPGTR ASATMIGNDE TNWGTKSLAI  60
   61 LDMPFTAVMD TILLPWDIFR KDSSVRSRVE KSEEETKMTN AVIPPAKMPP P

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.744727
Match:	PF07119.3
Description:	No description for PF07119.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits