YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16762484
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	548 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16762484.

Description	E-value	Query Range	Subject Range
YIDC_SALPA, OXAA... - Membrane protein insertase YidC OS=Salmonella paratyphi A GN=yidC PE=3 SV=1, Inner membrane protein ... YIDC_SALPK - Membrane protein insertase YidC OS=Salmonella paratyphi A (strain AKU_12601) GN=yidC PE=3 SV=1 YIDC_SALPA - Membrane protein insertase YidC OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yidC PE=3 S... YIDC_SALA4 - Membrane protein insertase YidC OS=Salmonella agona (strain SL483) GN=yidC PE=3 SV=1 gi\|194468665, gi... - gi\|194468665\|ref\|ZP_03074649.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica ser... gi\|195632342, gi... - gi\|195632342\|gb\|EDX50826.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica serovar... gi\|205331641, gi... - gi\|205331641\|gb\|EDZ18405.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica serovar... YIDC_SALPB - Membrane protein insertase YidC OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yidC PE=3... gi\|238913094 - gi\|238913094\|ref\|ZP_04656931.1\| putative inner membrane protein translocase component YidC [Salmonel... OXAA_SALPB - Inner membrane protein oxaA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=oxaA PE=3 SV=...	705.0	[0..1]	[548..1]
gi\|168260373, gi... - gi\|205350262\|gb\|EDZ36893.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica serovar... OXAA_SALTY - Inner membrane protein oxaA OS=Salmonella typhimurium GN=oxaA PE=3 SV=1 gi\|167548869, gi... - gi\|205325671\|gb\|EDZ13510.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica serovar... YIDC_SALTY - Membrane protein insertase YidC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=y... gi\|200387745, gi... - gi\|200387745\|ref\|ZP_03214357.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica ser... gi\|197243487, gi... - gi\|197265232\|ref\|ZP_03165306.1\| inner membrane protein OxaA [Salmonella enterica subsp. enterica ser... OXAA_SALTY, YIDC... - Membrane protein insertase YidC OS=Salmonella typhimurium GN=yidC PE=3 SV=1, Inner membrane protein ... lcl\|NC_016856.1_... - [gene=yidC] [protein=putative inner membrane protein translocase component YidC] [protein_id=YP_0052...	704.0	[0..1]	[548..1]
YIDC_SALCH - Membrane protein insertase YidC OS=Salmonella choleraesuis (strain SC-B67) GN=yidC PE=3 SV=1 OXAA_SALCH - Inner membrane protein oxaA OS=Salmonella choleraesuis GN=oxaA PE=3 SV=1 OXAA_SALCH, YIDC... - Membrane protein insertase YidC OS=Salmonella choleraesuis GN=yidC PE=3 SV=1, Inner membrane protein...	700.0	[0..1]	[548..1]
gi\|192957453, gi... - gi\|75236428\|ref\|ZP_00720524.1\| COG0706: Preprotein translocase subunit YidC [Escherichia coli E11001...	695.0	[0..1]	[548..1]
gi\|89110307, gi\|... - gi\|89110307\|ref\|AP_004087.1\| cytoplasmic insertase into membrane protein, Sec system [Escherichia co... gi\|188495796, gi... - gi\|75514233\|ref\|ZP_00736541.1\| COG0706: Preprotein translocase subunit YidC [Escherichia coli 53638]... gi\|75231025, gi\|... - gi\|75231025\|ref\|ZP_00717460.1\| COG0706: Preprotein translocase subunit YidC [Escherichia coli B7A], ... EG11197 - membrane protein insertase / Membrane protein insertase; inner membrane protein integration factor; ... EG11197 - membrane protein insertase / Membrane protein insertase; inner membrane protein integration factor; ... YIDC_ECOBW - Membrane protein insertase YidC OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yidC PE=3 SV=1 gi\|226838889, gi... - gi\|254038924\|ref\|ZP_04872976.1\| inner membrane protein oxaA [Escherichia sp. 1_1_43], gi\|226838889\|g... OXAA_ECOLI - Inner membrane protein oxaA - Escherichia coli YIDC_ECODH - Membrane protein insertase YidC OS=Escherichia coli (strain K12 / DH10B) GN=yidC PE=3 SV=1	693.0	[0..1]	[548..1]
YIDC_ECOUT - Membrane protein insertase YidC OS=Escherichia coli (strain UTI89 / UPEC) GN=yidC PE=1 SV=1 gi\|13364115, gi\|... - gi\|15833894\|ref\|NP_312667.1\| putative inner membrane protein translocase component YidC [Escherichia... YIDC_ECO57 - Membrane protein insertase YidC OS=Escherichia coli O157:H7 GN=yidC PE=3 SV=1 gi\|217321710, gi... - gi\|217325489\|ref\|ZP_03441573.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. TW14588],... OXAA_ECOL6, YIDC... - Membrane protein insertase YidC OS=Escherichia coli O6 GN=yidC PE=3 SV=1, Inner membrane protein oxa... YIDC_ECO8A - Membrane protein insertase YidC OS=Escherichia coli O8 (strain IAI1) GN=yidC PE=3 SV=1 YIDC_ECO45 - Membrane protein insertase YidC OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yidC PE=3 SV=1 YIDC_ECO81 - Membrane protein insertase YidC OS=Escherichia coli O81 (strain ED1a) GN=yidC PE=3 SV=1 YIDC_ECOL5 - Membrane protein insertase YidC OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yidC PE=3 SV=1 YIDC_ECO55 - Membrane protein insertase YidC OS=Escherichia coli (strain 55989 / EAEC) GN=yidC PE=3 SV=1 YIDC_ECO7I - Membrane protein insertase YidC OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yidC PE=3 SV=1 YIDC_ECOLC - Membrane protein insertase YidC OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yidC P... YIDC_ECOLU - Membrane protein insertase YidC OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yidC PE=3... gi\|209754080, gi... - pir\|\|H91208 60 KD inner-membrane protein [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|12518544, gi\|... - gi\|15804299\|ref\|NP_290338.1\| putative inner membrane protein translocase component YidC [Escherichia... YIDC_ECOL6 - Membrane protein insertase YidC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yi... YIDC_SHISS - Membrane protein insertase YidC OS=Shigella sonnei (strain Ss046) GN=yidC PE=3 SV=1 YIDC_ECOHS - Membrane protein insertase YidC OS=Escherichia coli O9:H4 (strain HS) GN=yidC PE=3 SV=1 gi\|191170354, gi... - gi\|75242506\|ref\|ZP_00726250.1\| COG0706: Preprotein translocase subunit YidC [Escherichia coli F11], ... YIDC_ECOSM - Membrane protein insertase YidC OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yidC PE=3 SV=1 gi\|195936328 - gi\|195936328\|ref\|ZP_03081710.1\| putative inner membrane protein translocase component YidC [Escheric... YIDC_ECOK1 - Membrane protein insertase YidC OS=Escherichia coli O1:K1 / APEC GN=yidC PE=3 SV=1 gi\|208806756, gi... - gi\|208806756\|ref\|ZP_03249093.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4206], ... gi\|124530080, gi... - gi\|124530080\|ref\|ZP_01700863.1\| 60 kDa inner membrane insertion protein [Escherichia coli B], gi\|124... gi\|208813372, gi... - gi\|208813372\|ref\|ZP_03254701.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4045], ... gi\|208818916, gi... - gi\|208818916\|ref\|ZP_03259236.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4042], ... YIDC_ECO5E - Membrane protein insertase YidC OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yidC PE=3 SV=1 gi\|254795708, gi... - gi\|254795708\|ref\|YP_003080545.1\| cytoplasmic insertase into membrane protein, Sec system [Escherichi... YIDC_ECOSE - Membrane protein insertase YidC OS=Escherichia coli (strain SE11) GN=yidC PE=3 SV=1 gi\|226902771, gi... - gi\|237703507\|ref\|ZP_04533988.1\| inner-membrane protein [Escherichia sp. 3_2_53FAA], gi\|226902771\|gb\|... YIDC_ECO27 - Membrane protein insertase YidC OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yidC PE=3 SV... gi\|227839206, gi... - gi\|227883928\|ref\|ZP_04001733.1\| Oxa1 family cytochrome oxidase biogenesis protein [Escherichia coli ... sp\|B7UMH2\|OXAA_ECO27 - Inner membrane protein oxaA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=oxaA PE=3 SV=1 gi\|168748575, gi... - gi\|188016887\|gb\|EDU55009.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4113], gi\|1... gi\|168753598, gi... - gi\|189359277\|gb\|EDU77696.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4401], gi\|1... gi\|189369628, gi... - gi\|189369628\|gb\|EDU88044.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4501], gi\|1... gi\|189364371, gi... - gi\|189364371\|gb\|EDU82790.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4486], gi\|1... gi\|168772256, gi... - gi\|187771700\|gb\|EDU35544.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4196], gi\|1... gi\|189002654, gi... - gi\|189002654\|gb\|EDU71640.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC4076], gi\|1... gi\|189373378, gi... - gi\|189373378\|gb\|EDU91794.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|168798744, gi... - gi\|189378759\|gb\|EDU97175.1\| inner membrane protein OxaA [Escherichia coli O157:H7 str. EC508], gi\|16...	693.0	[0..1]	[548..1]
YIDC_SHIFL - Membrane protein insertase YidC OS=Shigella flexneri GN=yidC PE=3 SV=1 gi\|56480409, gi\|... - gi\|56480409\|ref\|NP_709495.2\| putative inner membrane protein translocase component YidC [Shigella fl...	692.0	[0..1]	[548..1]
YIDC_SHIBS - Membrane protein insertase YidC OS=Shigella boydii serotype 4 (strain Sb227) GN=yidC PE=3 SV=1 YIDC_SHIB3 - Membrane protein insertase YidC OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yidC ...	692.0	[0..1]	[548..1]
gi\|194431207, gi... - gi\|83571503\|ref\|ZP_00922943.1\| COG0706: Preprotein translocase subunit YidC [Shigella dysenteriae 10...	692.0	[0..1]	[548..1]
YIDC_ECO24 - Membrane protein insertase YidC OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yidC PE=3 SV...	692.0	[0..1]	[548..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQRNLLVI ALLFVSFMIW QAWEQDKNPQ PQTQQTMQTT TTAAGSAADQ GVPASGQGKM  60
   61 ITVKTDVLDL TINTRGGDVE QALLPAYPKE LGSNEPFQLL ETTPQFIYQA QSGLTGRDG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [120-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDNPANGPRP LYNVEKDAFV LADGQNELQV PMTYTDAAGN TFTKTFVFKR GDYAVNVNYS  60
   61 VQNTGEKPLE VSTFGQLKQS VNLPPHRDTG SSNFALHTFR GAAYSTPDEK YEKYKFDTI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [239-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADNENLNVSS KGGWVAMLQQ YFATAWIPRN DGTNNFYTAN LGNGIVAIGY KAQPVLVQPG  60
   61 QTGAMTSTLW VGPEIQDKMA AVAPHLDLTV DYG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [332-548]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WLWFISQPLF KLLKWIHSFV GNWGFSIIII TFIVRGIMYP LTKAQYTSMA KMRMLQPKIQ  60
   61 AMRERLGDDK QRQSQEMMAL YKAEKVNPLG GCFPLIIQMP IFLALYYMLM GSIELRHAPF 120
  121 ALWIHDLSAQ DPYYILPILM GVTMFFIQKM SPTTVTDPMQ QKIMTFMPVI FTVFFLWFPS 180
  181 GLVLYYIVSN LVTIIQQQLI YRGLEKRGLH SREKKKS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	123.468521
Match:	PF02096.8
Description:	No description for PF02096.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits