YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16504783, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	487 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16504783, gi|....

Description	E-value	Query Range	Subject Range
gi\|62129968, gi\|... - gi\|62182335\|ref\|YP_218752.1\| xanthine/uracil permease family protein [Salmonella enterica subsp. ent...	2.0E-80	[1..487]	[1..487]
gi\|16422424 - gi\|16422424\|gb\|AAL22709.1\| putative xanthine/uracil permeases family [Salmonella enterica subsp. ent... gi\|56415721, gi\|... - gi\|56415721\|ref\|YP_152796.1\| putative membrane transport protein [Salmonella enterica subsp. enteric... gi\|197364649, gi... - gi\|197364649\|ref\|YP_002144286.1\| putative membrane transport protein [Salmonella enterica subsp. ent...	3.0E-80	[1..487]	[1..487]
gi\|67535384, gi\|... - gi\|67543205\|ref\|ZP_00421138.1\| Xanthine/uracil/vitamin C permease [Burkholderia vietnamiensis G4], g...	9.0E-73	[39..486]	[121..567]
gi\|94314734, gi\|... - gi\|94314734\|ref\|YP_587943.1\| xanthine/uracil/vitamin C permease [Ralstonia metallidurans CH34], gi\|9...	2.0E-69	[34..487]	[1..453]
gi\|90413686, gi\|... - gi\|90413686\|ref\|ZP_01221675.1\| putative transporter [Photobacterium profundum 3TCK], gi\|90325307\|gb\|...	2.0E-68	[55..485]	[18..449]
gi\|54309433, gi\|... - gi\|54309433\|ref\|YP_130453.1\| putative transporter [Photobacterium profundum SS9], gi\|46913869\|emb\|CA...	2.0E-68	[55..485]	[18..449]
gi\|113531013, gi... - gi\|116696514\|ref\|YP_842090.1\| major facilitator superfamily transporter AzgA family protein [Ralston...	3.0E-68	[32..487]	[1..458]
gi\|26110838, gi\|... - gi\|26250408\|ref\|NP_756448.1\| hypothetical protein c4588 [Escherichia coli CFT073], gi\|26110838\|gb\|AA...	5.0E-68	[20..485]	[5..470]
gi\|72122498, gi\|... - gi\|73539161\|ref\|YP_299528.1\| xanthine/uracil/vitamin C permease:sulphate transporter [Ralstonia eutr...	6.0E-68	[52..487]	[19..453]
gi\|24115020, gi\|... - gi\|24115020\|ref\|NP_709530.1\| hypothetical protein SF3797 [Shigella flexneri 2a str. 301], gi\|2405427... gi\|30043238, gi\|... - gi\|30064977\|ref\|NP_839148.1\| hypothetical protein S3971 [Shigella flexneri 2a str. 2457T], gi\|300432...	6.0E-68	[20..485]	[5..470]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGRNRCRTN KLSEKNYHTT APGVAFWYRI TANFPSFLRK LIMSQQHTTQ ASGQGMLERV  60
   61 FKLREHGTTA RTEVIAGFTT FLTMVYIVFV NPQILGVAGM DTSAVFVTTC LIAAFGSILM 120
  121 GLFANLPVAL APAMGLNAFF AFVVVQAMGL PWQVGMGAIF WGAVGLLLLT IFRVRYWMIA 180
  181 NIPVSLRVGI TSGIGLFIGM MGLKNAGVIV ANPETLVS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [219-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGNLTSHSVL LGVLGFFIIA ILASRNIHAA VLVSIIVTTL LGWIMGDVHY NGIVSAPPSV  60
   61 TSVVGHVDLA GSFNLGLAGV IFSFMLVNLF DSSGTLIGVT DKAGLA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [325-487]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEKGKFPRMK QALFVDSISS VTGAFVGTSS VTAYIESSSG VSVGGRTGLT AVVVGILFLL  60
   61 VIFLSPLAGM VPPYAAAGAL IYVGVLMTSS LARVNWQDLT ESVPAFITAV MMPFSFSITE 120
  121 GIALGFISYC VMKIGTGRLR DLSPCVVIVA LLFVLKIVFI DAH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits