YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16504682, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16504682, gi|....

Description	E-value	Query Range	Subject Range
gi\|197096308, gi... - gi\|197364831\|ref\|YP_002144468.1\| hypothetical protein SSPA3627 [Salmonella enterica subsp. enterica ... gi\|56415902, gi\|... - gi\|56415902\|ref\|YP_152977.1\| hypothetical protein SPA3899 [Salmonella enterica subsp. enterica serov... gi\|62130150, gi\|... - gi\|62182517\|ref\|YP_218934.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov...	2.0E-91	[1..250]	[1..250]
gi\|16422621 - gi\|16422621\|gb\|AAL22896.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar...	3.0E-91	[1..250]	[1..250]
gi\|13364312, gi\|... - gi\|15834090\|ref\|NP_312863.1\| hypothetical protein ECs4836 [Escherichia coli O157:H7], gi\|13364312\|db... gi\|209747424, gi... - pir\|\|D86080 hypothetical protein yiiM [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12518809, gi\|... - gi\|15804500\|ref\|NP_290540.1\| hypothetical protein Z5455 [Escherichia coli O157:H7 EDL933], gi\|125188... gi\|13364312, gi\|... - gi\|15834090\|ref\|NP_312863.1\| hypothetical protein ECs4836 [Escherichia coli O157:H7 str. Sakai], gi\|...	7.0E-76	[18..245]	[7..234]
gi\|39654307, gi\|... - gi\|39654308\|pdb\|1O65\|C Chain C, Crystal Structure Of An Hypothetical Protein, gi\|39654307\|pdb\|1O65\|B...	1.0E-75	[11..246]	[2..237]
gi\|17428171 - gi\|17428171\|emb\|CAD14859.1\| conserved hypothetical protein [Ralstonia solanacearum GMI1000] gi\|17545876 - gi\|17545876\|ref\|NP_519278.1\| hypothetical protein RSc1157 [Ralstonia solanacearum GMI1000]	1.0E-75	[23..249]	[7..234]
gi\|16131750, gi\|... - gb\|AAC76892.1\| orf, hypothetical protein; conserved hypothetical protein [Escherichia coli K12], gi... gi\|82546260, gi\|... - gi\|82546260\|ref\|YP_410207.1\| hypothetical protein SBO_3928 [Shigella boydii Sb227], gi\|81247671\|gb\|A... gi\|305014\|gb\|AAB... - ORF_o234 [Escherichia coli] gi\|305014, gi\|541118 - pir\|\|S40854 hypothetical 26.6K protein (kdgt-cpxa intergenic region) - Escherichia coli (strain K-12... gi\|226838563, gi... - gi\|254039127\|ref\|ZP_04873177.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683856...	2.0E-75	[18..245]	[7..234]
gi\|227885349, gi... - gi\|227885349\|ref\|ZP_04003154.1\| MOSC domain protein [Escherichia coli 83972], gi\|227837725\|gb\|EEJ481... gi\|91075025, gi\|... - gi\|91213451\|ref\|YP_543437.1\| hypothetical protein YiiM [Escherichia coli UTI89], gi\|91075025\|gb\|ABE0... gi\|26250676, gi\|... - gi\|26250676\|ref\|NP_756716.1\| Hypothetical protein yiiM [Escherichia coli CFT073], gi\|26111107\|gb\|AAN...	5.0E-75	[18..245]	[7..234]
gi\|115515302, gi... - gi\|117626178\|ref\|YP_859501.1\| hypothetical protein APECO1_2558 [Escherichia coli APEC O1], gi\|115515... gi\|226902879, gi... - gi\|237702942\|ref\|ZP_04533423.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	6.0E-75	[18..245]	[2..229]
gi\|81243070, gi\|... - gi\|82778922\|ref\|YP_405271.1\| hypothetical protein SDY_3836 [Shigella dysenteriae Sd197], gi\|81243070...	8.0E-75	[18..245]	[7..234]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHVCRSESDD SLFLYPRKEQ QMHYPVDVFI GKIRDYDGSR PSAIAKVQID GELMLTELGL  60
   61 AGDQQAEKKI HGGPDRALCH YPREHYADWI RQFPEQATLF CAPAFGENLS TDGMTEHNVF 120
  121 IGDIYRWGEA LIQVTQPRSP CFKLNFHFAI SDMALLMQNS GKTGWLYRVI APGKVSSDAP 180
  181 LELASRLSDV SVHEAGVIAW SMPFDDEQYH RLLSAAGLSA SWSRTMQKRR LSGKIEDSAR 240
  241 RLWGDKTPPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.045757
Match:	1o65A
Description:	Crystal structure of an hypothetical protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.442129199706088	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: