YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25380133, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25380133, gi|....

Description	E-value	Query Range	Subject Range
gi\|83569820 - gi\|83569820\|ref\|ZP_00921269.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito...	4.0E-31	[1..166]	[2..167]
EG11872 - inhibitor of the cpx response; periplasmic adaptor protein / Inhibitor of the cpx response; periplas... gi\|161367475 - gi\|161367475\|ref\|NP_290543.2\| periplasmic repressor CpxP [Escherichia coli O157:H7 EDL933] gi\|188487283, gi... - gi\|188492084\|ref\|ZP_02999354.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848728... gi\|170083384, gi... - gi\|170083384\|ref\|YP_001732704.1\| periplasmic protein combats stress [Escherichia coli str. K-12 subs... gi\|195937555 - gi\|195937555\|ref\|ZP_03082937.1\| periplasmic repressor CpxP [Escherichia coli O157:H7 str. EC4024] gi\|193063997, gi... - gi\|193063997\|ref\|ZP_03045083.1\| periplasmic protein CpxP [Escherichia coli E22], gi\|192929462\|gb\|EDV... CPXP_SHIFL - Periplasmic protein CpxP OS=Shigella flexneri GN=cpxP PE=3 SV=1 gi\|209397775, gi... - gi\|209397775\|ref\|YP_002273431.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4115], gi... EG11872 - inhibitor of the cpx response; periplasmic adaptor protein / Inhibitor of the cpx response; periplas... gi\|208741696, gi... - gi\|208821573\|ref\|ZP_03261893.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|215267317, gi... - gi\|215489245\|ref\|YP_002331676.1\| periplasmic repressor CpxP [Escherichia coli O127:H6 str. E2348/69]... gi\|209921393, gi... - gi\|209921393\|ref\|YP_002295477.1\| periplasmic repressor CpxP [Escherichia coli SE11], gi\|209914652\|db... CPXP_ECOL6 - Periplasmic protein CpxP OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cpxP PE=3... gi\|161485828 - gi\|161485828\|ref\|NP_709719.3\| periplasmic repressor CpxP [Shigella flexneri 2a str. 301] gi\|161950015 - gi\|161950015\|ref\|YP_405268.2\| periplasmic repressor CpxP [Shigella dysenteriae Sd197] gi\|161486410 - gi\|161486410\|ref\|NP_838963.2\| periplasmic repressor CpxP [Shigella flexneri 2a str. 2457T] gi\|161986403 - gi\|161986403\|ref\|YP_312833.2\| periplasmic repressor CpxP [Shigella sonnei Ss046] gi\|161984811 - gi\|161984811\|ref\|YP_410210.2\| periplasmic repressor CpxP [Shigella boydii Sb227] gi\|169757003, gi... - gi\|170022075\|ref\|YP_001727029.1\| periplasmic repressor CpxP [Escherichia coli ATCC 8739], gi\|1697570... gi\|162139737 - gi\|162139737\|ref\|NP_312866.2\| periplasmic repressor CpxP [Escherichia coli O157:H7 str. Sakai] gi\|218429762, gi... - gi\|218692198\|ref\|YP_002400410.1\| periplasmic repressor CpxP [Escherichia coli ED1a], gi\|218429762\|em... gi\|218363245, gi... - gi\|218556476\|ref\|YP_002389390.1\| periplasmic repressor CpxP [Escherichia coli IAI1], gi\|218363245\|em... CPXP_ECOL6 - Periplasmic protein CpxP OS=Escherichia coli O6 GN=cpxP PE=3 SV=1 gi\|218701383, gi... - gi\|218701383\|ref\|YP_002409012.1\| periplasmic repressor CpxP [Escherichia coli IAI39], gi\|218371369\|e... gi\|89110115, gi\|... - gi\|89110115\|ref\|AP_003895.1\| periplasmic protein combats stress [Escherichia coli str. K-12 substr. ... gi\|218354360, gi... - gi\|218697628\|ref\|YP_002405295.1\| periplasmic repressor CpxP [Escherichia coli 55989], gi\|218354360\|e... gi\|75238357 - gi\|75238357\|ref\|ZP_00722356.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|75230435 - gi\|75230435\|ref\|ZP_00716921.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|218434635, gi... - gi\|218707538\|ref\|YP_002415057.1\| periplasmic repressor CpxP [Escherichia coli UMN026], gi\|218434635\|... gi\|75197786, gi\|... - gi\|75197786\|ref\|ZP_00707856.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|75188649, gi\|... - gi\|75188649\|ref\|ZP_00701916.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|110807396, gi... - gi\|110807396\|ref\|YP_690916.1\| periplasmic repressor CpxP [Shigella flexneri 5 str. 8401], gi\|1106169... gi\|238862008, gi... - gi\|238902980\|ref\|YP_002928776.1\| periplasmic protein combats stress [Escherichia coli BW2952], gi\|23... CPXP_ECOLI - Periplasmic protein cpxP precursor - Escherichia coli gi\|254595313, gi... - gi\|254795913\|ref\|YP_003080750.1\| periplasmic protein combats stress [Escherichia coli O157:H7 str. T... gi\|124501277, gi... - gi\|124527575\|ref\|ZP_01699040.1\| protein of unknown function, Spy-related [Escherichia coli B], gi\|12...	7.0E-31	[1..151]	[1..151]
gi\|217322373, gi... - gi\|217326152\|ref\|ZP_03442236.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. TW14588], gi... gi\|254039130, gi... - gi\|254039130\|ref\|ZP_04873180.1\| periplasmic protein CpxP [Escherichia sp. 1_1_43], gi\|226838566\|gb\|E... gi\|227837722, gi... - gi\|227885346\|ref\|ZP_04003151.1\| periplasmic protein CpxP [Escherichia coli 83972], gi\|227837722\|gb\|E... gi\|189010231, gi... - gi\|189010231\|ref\|ZP_02805835.2\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|189403092, gi... - gi\|189403092\|ref\|ZP_02793220.2\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|189404026, gi... - gi\|189404026\|ref\|ZP_02786713.2\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|189373441, gi... - gi\|189404886\|ref\|ZP_02811774.2\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|191166404, gi... - gi\|191166404\|ref\|ZP_03028235.1\| periplasmic protein CpxP [Escherichia coli B7A], gi\|190903504\|gb\|EDV... gi\|192958584, gi... - gi\|193067964\|ref\|ZP_03048929.1\| periplasmic protein CpxP [Escherichia coli E110019], gi\|192958584\|gb... gi\|208808100, gi... - gi\|208808100\|ref\|ZP_03250437.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|208813683, gi... - gi\|208813683\|ref\|ZP_03255012.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|15804503, gi\|... - gi\|15804503\|ref\|NP_290543.1\| hypothetical protein Z5458 [Escherichia coli O157:H7 EDL933], gi\|125188... gi\|13364315, gi\|... - gi\|15834093\|ref\|NP_312866.1\| hypothetical protein ECs4839 [Escherichia coli O157:H7], gi\|13364315\|db... gi\|26250679, gi\|... - gi\|26250679\|ref\|NP_756719.1\| hypothetical protein c4865 [Escherichia coli CFT073], gi\|26111110\|gb\|AA... gi\|24115209, gi\|... - ref\|NP_709719.1\| yiiO gene product [Shigella flexneri 2a str. 301], gb\|AAN45426.1\| yiiO gene produc... gi\|209752420, gi... - gi\|305017\|gb\|AAB03046.1\| ORF_o167 [Escherichia coli], pir\|\|G91233 hypothetical protein ECs4839 [impo... gi\|74314414, gi\|... - gi\|74314414\|ref\|YP_312833.1\| Uncharacterized periplasmic protein [Shigella sonnei Ss046], gi\|7385789... gi\|81243067, gi\|... - gi\|82778919\|ref\|YP_405268.1\| Uncharacterized periplasmic protein [Shigella dysenteriae Sd197], gi\|81... gi\|75258103 - gi\|75258103\|ref\|ZP_00729564.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|75513936 - gi\|75513936\|ref\|ZP_00736289.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|81247674, gi\|... - gi\|82546263\|ref\|YP_410210.1\| Uncharacterized periplasmic protein [Shigella boydii Sb227], gi\|8124767... gi\|13364315, gi\|... - gi\|15834093\|ref\|NP_312866.1\| hypothetical protein ECs4839 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|194414516, gi... - gi\|75211272\|ref\|ZP_00711371.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|168748792, gi... - gi\|188016777\|gb\|EDU54899.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|305017\|gb\|AAB... - ORF_o167 [Escherichia coli] gi\|189357120, gi... - gi\|189357120\|gb\|EDU75539.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|187769156, gi... - gi\|187769156\|gb\|EDU33000.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|189378067, gi... - gi\|189378067\|gb\|EDU96483.1\| periplasmic protein CpxP [Escherichia coli O157:H7 str. EC508], gi\|16879... gi\|170682865, gi... - gi\|170682865\|ref\|YP_001746251.1\| periplasmic protein CpxP [Escherichia coli SMS-3-5], gi\|170520583\|g...	1.0E-30	[1..151]	[2..152]
gi\|83586242, gi\|... - gi\|83586242\|ref\|ZP_00924878.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito...	1.0E-30	[1..151]	[2..152]
gi\|75240307 - gi\|75240307\|ref\|ZP_00724247.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|110345842, gi... - gi\|110644250\|ref\|YP_671980.1\| periplasmic repressor CpxP [Escherichia coli 536], gi\|110345842\|gb\|ABG...	3.0E-30	[1..151]	[1..151]
gi\|226902882, gi... - gi\|237702945\|ref\|ZP_04533426.1\| periplasmic repressor CpxP [Escherichia sp. 3_2_53FAA], gi\|226902882... gi\|91213454, gi\|... - gi\|91213454\|ref\|YP_543440.1\| hypothetical protein UTI89_C4497 [Escherichia coli UTI89], gi\|91075028\|... gi\|115515305, gi... - gi\|117626181\|ref\|YP_859504.1\| periplasmic repressor CpxP [Escherichia coli APEC O1], gi\|115515305\|gb...	6.0E-30	[1..151]	[2..152]
gi\|205274143, gi... - gi\|205354362\|ref\|YP_002228163.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica ser... gi\|207859248, gi... - gi\|207859248\|ref\|YP_002245899.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica ser... gi\|199604699, gi... - gi\|200387601\|ref\|ZP_03214213.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar V... gi\|204930236, gi... - gi\|204930236\|ref\|ZP_03221213.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar J... gi\|197364835, gi... - gi\|197364835\|ref\|YP_002144472.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica ser... gi\|197937688, gi... - gi\|198243172\|ref\|YP_002217987.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar ... gi\|197214649, gi... - gi\|197250946\|ref\|YP_002148991.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar ... gi\|197263835, gi... - gi\|197263835\|ref\|ZP_03163909.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar S... gi\|194410073, gi... - gi\|194451769\|ref\|YP_002048064.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica ser... gi\|16422625, gi\|... - gi\|16767326\|ref\|NP_462941.1\| periplasmic repressor CpxP [Salmonella typhimurium LT2], gi\|16422625\|gb... gi\|194469124, gi... - gi\|194469124\|ref\|ZP_03075108.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar K... gi\|168821592, gi... - gi\|205341893\|gb\|EDZ28657.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar Welte... gi\|194404921, gi... - gi\|194446258\|ref\|YP_002043285.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar ... gi\|168263039, gi... - gi\|205348071\|gb\|EDZ34702.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar Hadar... gi\|195630141, gi... - gi\|195630141\|gb\|EDX48781.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar Newpo... gi\|205332786, gi... - gi\|205332786\|gb\|EDZ19550.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar Kentu... gi\|168244187, gi... - gi\|205336910\|gb\|EDZ23674.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar Heide... gi\|167991592, gi... - gi\|205330003\|gb\|EDZ16767.1\| periplasmic repressor [Salmonella enterica subsp. enterica serovar 4,[5]... gi\|238912205 - gi\|238912205\|ref\|ZP_04656042.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica sero... gi\|62182521, gi\|... - gi\|62182521\|ref\|YP_218938.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica serovar... lcl\|NC_016856.1_... - [gene=cpxP] [protein=repressor CpxP] [protein_id=YP_005240336.1] [location=4284179..4284679] gi\|224585873, gi... - gi\|224585873\|ref\|YP_002639672.1\| extracytoplasmic stress protein for protein-mediated toxicities [Sa... gi\|56130163, gi\|... - gi\|56415906\|ref\|YP_152981.1\| periplasmic repressor CpxP [Salmonella enterica subsp. enterica serovar...	2.0E-29	[1..151]	[1..151]
gi\|75176701 - gi\|75176701\|ref\|ZP_00696829.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito...	1.0E-28	[1..151]	[2..156]
gi\|82776812, gi\|... - gi\|82776812\|ref\|YP_403161.1\| periplasmic protein [Shigella dysenteriae Sd197], gi\|81240960\|gb\|ABB616...	3.0E-27	[1..155]	[1..161]
gi\|25380129 - pir\|\|AC0010 probable exported protein cpxP [imported] - Yersinia pestis (strain CO92) gi\|162420508, gi... - gi\|77633895\|ref\|ZP_00796008.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|229904465, gi... - gi\|229904465\|ref\|ZP_04519576.1\| P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- ... gi\|149290271, gi... - gi\|150260863\|ref\|ZP_01917591.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149290271\|... gi\|153950411, gi... - gi\|77630849\|ref\|ZP_00793435.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|22123987, gi\|... - gi\|22123987\|ref\|NP_667410.1\| periplasmic stress adaptor protein CpxP [Yersinia pestis KIM], gi\|21956... gi\|27544275 - gi\|27544275\|dbj\|BAC54910.1\| hypothetical protein [Yersinia pseudotuberculosis] gi\|229706636, gi... - gi\|229836188\|ref\|ZP_04456356.1\| P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- ... gi\|218927294, gi... - gi\|218927294\|ref\|YP_002345169.1\| periplasmic stress adaptor protein CpxP [Yersinia pestis CO92], gi\|... gi\|229839924, gi... - gi\|229839924\|ref\|ZP_04460083.1\| P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- ... gi\|45439939, gi\|... - gi\|45439939\|ref\|NP_991478.1\| periplasmic stress adaptor protein CpxP [Yersinia pestis biovar Microtu... gi\|229842006, gi... - gi\|229842006\|ref\|ZP_04462161.1\| P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- ... gi\|165936156, gi... - gi\|89103446\|ref\|ZP_01176023.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|108809459, gi... - gi\|108809459\|ref\|YP_653375.1\| periplasmic stress adaptor protein CpxP [Yersinia pestis Antiqua], gi\|... gi\|165989621, gi... - gi\|166011475\|ref\|ZP_02232373.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165926138, gi... - gi\|165926138\|ref\|ZP_02221970.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167398953, gi... - gi\|167398953\|ref\|ZP_02304477.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166213737, gi... - gi\|166213737\|ref\|ZP_02239772.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167054373, gi... - gi\|167426684\|ref\|ZP_02318437.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167419212, gi... - gi\|167419212\|ref\|ZP_02310965.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|170026338, gi... - gi\|170026338\|ref\|YP_001722843.1\| periplasmic stress adaptor protein CpxP [Yersinia pseudotuberculosi... gi\|167468393 - gi\|167468393\|ref\|ZP_02333097.1\| hypothetical protein YpesF_10944 [Yersinia pestis FV-1]	3.0E-25	[1..156]	[1..162]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKVTAAVMA STLAFSFLSH AAEVVTSDNW HPGDGATQRS AQNHMFDGIS LTEHQRQQMR  60
   61 DLMQQARHEQ PPVNVSEMET MHRLVTAEKF DESVVRAQAE KMAQEQVARQ VEMARVRNQM 120
  121 YRLLTPEQQA VLNEKHQQRM EQLRDVAQWQ KSSSLKLLSS SNSRSQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits