YRC Public Data Repository - Protein Structure Prediction

Protein:	UBIE_SALTI
Organism:	Salmonella typhi
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBIE_SALTI.

Description	E-value	Query Range	Subject Range
UBIE_ECOK1 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli O1:K1 / APEC GN=ubi... UBIE_ECOL6 - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Escherichia coli O6 GN=ubiE PE=3 SV=1 gi\|191173929, gi... - gi\|75237632\|ref\|ZP_00721652.1\| COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [E... UBIE_ECOL6 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli O6:H1 (strain CFT07... gi\|227888553, gi... - gi\|227888553\|ref\|ZP_04006358.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Escherichia c... UBIE_ECO45 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli O45:K1 (strain S88 ... gi\|226903039, gi... - gi\|237702868\|ref\|ZP_04533349.1\| ubiquinone/menaquinone biosynthesis methyltransferase ubiE [Escheric... UBIE_ECO81 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli O81 (strain ED1a) G... UBIE_ECOUT - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli (strain UTI89 / UPE... UBIE_ECOL5 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli O6:K15:H31 (strain ...	5.0E-60	[1..251]	[1..251]
gi\|15804425, gi\|... - gi\|15804425\|ref\|NP_290465.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Escherichia coli... EG11473 - bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / S-adenosylmethionine:2-DMK methyltra... gi\|15834017, gi\|... - gi\|15834017\|ref\|NP_312790.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Escherichia coli... UBIE_SHIF8 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Shigella flexneri serotype 5b (strai... UBIE_ECOLI - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE (EC 2.1.1.-) - Escherichia coli gi\|189359289, gi... - gi\|189359289\|gb\|EDU77708.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Escherichia ... gi\|168750349, gi... - gi\|188015435\|gb\|EDU53557.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Escherichia ... gi\|168768120, gi... - gi\|189362634\|gb\|EDU81053.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Escherichia ... gi\|168763964, gi... - gi\|189365986\|gb\|EDU84402.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Escherichia ... gi\|24054401, gi\|... - gi\|24115129\|ref\|NP_709639.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Shigella flexner... UBIE_SHIFL - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Shigella flexneri GN=ubiE PE=3 SV=1 UBIE_ECO57 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli O157:H7 GN=ubiE PE=... gi\|30064870, gi\|... - gi\|30064870\|ref\|NP_839041.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Shigella flexner... sp\|B7UNG3\|UBIE_ECO27 - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Escherichia coli O127:H6 (strain E2348... gi\|124499196, gi... - gi\|124530430\|ref\|ZP_01701088.1\| ubiquinone/menaquinone biosynthesis methyltransferases [Escherichia ... UBIE_ECOBW - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli (strain K12 / MC410... gi\|226838737, gi... - gi\|254039046\|ref\|ZP_04873097.1\| ubiquinone/menaquinone biosynthesis methyltransferase ubiE [Escheric... gi\|254595231, gi... - gi\|254795831\|ref\|YP_003080668.1\| bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase [Esc... UBIE_SHISS - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Shigella sonnei (strain Ss046) GN=ub... gi\|208814084, gi... - gi\|208814084\|ref\|ZP_03255413.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Escheric... UBIE_SHIDS - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Shigella dysenteriae serotype 1 (str... gi\|208727266, gi... - gi\|208807465\|ref\|ZP_03249802.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Escheric... gi\|193065706, gi... - gi\|75256243\|ref\|ZP_00727921.1\| COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [E... UBIE_ECO5E - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli O157:H7 (strain EC4... gi\|188491557, gi... - gi\|75512612\|ref\|ZP_00735124.1\| COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [E... gi\|208819338, gi... - gi\|208819338\|ref\|ZP_03259658.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Escheric... UBIE_ECO27 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli O127:H6 (strain E23... UBIE_ECOLC - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli (strain ATCC 8739 /... UBIE_ECOSE - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli (strain SE11) GN=ub... UBIE_SHIBS - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Shigella boydii serotype 4 (strain S... UBIE_ECO8A - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli O8 (strain IAI1) GN... gi\|85676218, gi\|... - gi\|89110187\|ref\|AP_003967.1\| bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-ad... gi\|217325793, gi... - gi\|217325793\|ref\|ZP_03441877.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Escheric... UBIE_SHIB3 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Shigella boydii serotype 18 (strain ... gi\|189001430, gi... - gi\|189001430\|gb\|EDU70416.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Escherichia ... UBIE_ECO24 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli O139:H28 (strain E2... gi\|168775610, gi... - gi\|187768861\|gb\|EDU32705.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Escherichia ... gi\|168801097, gi... - gi\|189376704\|gb\|EDU95120.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Escherichia ... gi\|194438661, gi... - gi\|83585906\|ref\|ZP_00924545.1\| COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [E... gi\|168786677, gi... - gi\|189373295\|gb\|EDU91711.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Escherichia ... gi\|75230794, gi\|... - gi\|75230794\|ref\|ZP_00717257.1\| COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [E... UBIE_ECOSM - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli (strain SMS-3-5 / S... gi\|75238283, gi\|... - gi\|75238283\|ref\|ZP_00722282.1\| COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [E... UBIE_ECODH - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli (strain K12 / DH10B... UBIE_ECOHS - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli O9:H4 (strain HS) G... gi\|195938125 - gi\|195938125\|ref\|ZP_03083507.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Escherichia c... gi\|194412713, gi... - gi\|75209540\|ref\|ZP_00709761.1\| COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [E... gi\|170769855, gi... - gi\|170769855\|ref\|ZP_02904308.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Escheric... EG11473 - bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / S-adenosylmethionine:2-DMK methyltra... UBIE_ECO7I - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli O7:K1 (strain IAI39... UBIE_ECO55 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli (strain 55989 / EAE... UBIE_ECOLU - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Escherichia coli O17:K52:H18 (strain...	5.0E-60	[1..251]	[1..251]
gi\|194417704, gi... - gi\|83569331\|ref\|ZP_00920786.1\| COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [S...	2.0E-59	[1..251]	[1..251]
gi\|218321183, gi... - gi\|218708164\|ref\|YP_002415785.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Vibrio splen... gi\|85835662, gi\|... - gi\|86146605\|ref\|ZP_01064927.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Vibrio sp. MED...	3.0E-59	[6..251]	[19..264]
gi\|148231\|gb\|AAA... - o251 [Escherichia coli] gi\|148231 - gi\|148231\|gb\|AAA67628.1\| o251 [Escherichia coli]	3.0E-59	[1..251]	[1..251]
gi\|84386296, gi\|... - gi\|84386296\|ref\|ZP_00989324.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Vibrio splendi...	3.0E-59	[6..251]	[19..264]
UBIE_VIBVU - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Vibrio vulnificus (strain CMCP6) GN=... UBIE_VIBVY - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Vibrio vulnificus (strain YJ016) GN=... UBIE_VIBVU - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Vibrio vulnificus GN=ubiE PE=3 SV=1	4.0E-59	[4..251]	[13..260]
gi\|89074430, gi\|... - gi\|89074430\|ref\|ZP_01160907.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Photobacterium...	6.0E-59	[1..251]	[1..251]
gi\|77973692 - gi\|77973692\|ref\|ZP_00829238.1\| COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [Y...	7.0E-59	[1..251]	[1..251]
gi\|45443020, gi\|... - gi\|45443020\|ref\|NP_994559.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Yersinia pestis ... gi\|21957142, gi\|... - gi\|22124364\|ref\|NP_667787.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Yersinia pestis ... UBIE_YERPP - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Yersinia pestis (strain Pestoides F)... UBIE_YERPN - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Yersinia pestis bv. Antiqua (strain ... UBIE_YERPS - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Yersinia pseudotuberculosis GN=ubiE PE... gi\|229706050, gi... - gi\|229837107\|ref\|ZP_04457272.1\| bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/S-ade... UBIE_YERPS - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Yersinia pseudotuberculosis serotype... UBIE_YERPE - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Yersinia pestis GN=ubiE PE=3 SV=1 gi\|166205220, gi... - gi\|166213547\|ref\|ZP_02239582.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Yersinia... UBIE_YERPY - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Yersinia pseudotuberculosis serotype... gi\|167426240, gi... - gi\|167426240\|ref\|ZP_02317993.1\| ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Yersinia... UBIE_YERP3 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Yersinia pseudotuberculosis serotype... UBIE_YERPG - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Yersinia pestis bv. Antiqua (strain ... UBIE_YERPB - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Yersinia pseudotuberculosis serotype...	8.0E-59	[1..251]	[1..251]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEDSQETTH FGFQTVAKEQ KADMVAHVFH SVASKYDVMN DLMSFGIHRL WKRFTIDCSG  60
   61 VRRGQTVLDL AGGTGDLTAK FSRMVGETGK VILADINDSM LKMGREKLRN IGVIGNVEYV 120
  121 QANAEALPFP DNTFDCITIS FGLRNVTEKE KALRSMFRVL KPGGRLLVLE FSKPIIEPLS 180
  181 KAYDAYSFHI LPRIGSMVAN DADSYRYLAE SIRMHPDQDT LKAMMQDAGF ESVDYYNLTA 240
  241 GVVALHRGYK F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.045757
Match:	1vl5A
Description:	Crystal structure of hypothetical protein (BH2331) from Bacillus halodurans at 1.95 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	1.07321114919891	bayes_pls_golite062009
oxidoreductase activity	0.964067575431689	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.612108481676679	bayes_pls_golite062009
methyltransferase activity	0.606225212585352	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.14147363365106	bayes_pls_golite062009
binding	0.109975487409217	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: