YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29139126, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	328 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29139126, gi|....

Description	E-value	Query Range	Subject Range
gi\|93354450, gi\|... - gi\|94310598\|ref\|YP_583808.1\| glutathione S-transferase-like protein [Ralstonia metallidurans CH34], ...	2.0E-89	[1..327]	[1..326]
gi\|197364101, gi... - gi\|197364101\|ref\|YP_002143738.1\| hypothetical protein SSPA2896 [Salmonella enterica subsp. enterica ... gi\|56415172, gi\|... - gi\|56415172\|ref\|YP_152247.1\| hypothetical protein SPA3102 [Salmonella enterica subsp. enterica serov...	4.0E-89	[1..328]	[1..328]
gi\|91212531, gi\|... - gi\|91212531\|ref\|YP_542517.1\| putative transferase [Escherichia coli UTI89], gi\|91074105\|gb\|ABE08986.... gi\|110643351, gi... - gi\|110643351\|ref\|YP_671081.1\| putative glutathione S-transferase [Escherichia coli 536], gi\|11034494... gi\|218560186, gi... - gi\|218560186\|ref\|YP_002393099.1\| S-transferase [Escherichia coli S88], gi\|218366955\|emb\|CAR04726.1\| ... gi\|218691404, gi... - gi\|218691404\|ref\|YP_002399616.1\| S-transferase [Escherichia coli ED1a], gi\|218428968\|emb\|CAR09919.2\|... gi\|117625409, gi... - gi\|117625409\|ref\|YP_858732.1\| putative glutathione S-transferase [Escherichia coli APEC O1], gi\|1155... gi\|237706137, gi... - gi\|237706137\|ref\|ZP_04536618.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|190907544, gi... - gi\|75240863\|ref\|ZP_00724761.1\| COG0435: Predicted glutathione S-transferase [Escherichia coli F11], ...	8.0E-89	[1..328]	[1..328]
lcl\|NC_016856.1_... - [gene=yqjG] [protein=putative glutathione S-transferase] [protein_id=YP_005239413.1] [location=34167... gi\|199605221, gi... - gi\|200388123\|ref\|ZP_03214735.1\| glutathione S-transferase [Salmonella enterica subsp. enterica serov... gi\|194450561, gi... - gi\|194450561\|ref\|YP_002047270.1\| glutathione S-transferase [Salmonella enterica subsp. enterica sero... gi\|197240221, gi... - gi\|197261966\|ref\|ZP_03162040.1\| glutathione S-transferase [Salmonella enterica subsp. enterica serov... gi\|205331193, gi... - gi\|205331193\|gb\|EDZ17957.1\| glutathione S-transferase [Salmonella enterica subsp. enterica serovar 4... gi\|205337878, gi... - gi\|205337878\|gb\|EDZ24642.1\| glutathione S-transferase [Salmonella enterica subsp. enterica serovar H... gi\|16766532, gi\|... - gi\|16766532\|ref\|NP_462147.1\| putative glutathione S-transferase [Salmonella typhimurium LT2], gi\|164...	2.0E-88	[1..328]	[1..328]
gi\|110645998, gi... - gi\|110832887\|ref\|YP_691746.1\| glutathione S-transferase domain-containing protein [Alcanivorax borku...	5.0E-88	[1..327]	[1..327]
gi\|80976232, gi\|... - gi\|81177082\|ref\|ZP_00875977.1\| Glutathione S-transferase, C-terminal [Streptococcus suis 89/1591], g...	2.0E-87	[1..317]	[1..316]
gi\|85695918, gi\|... - gi\|85717277\|ref\|ZP_01048232.1\| Glutathione S-transferase, C-terminal [Nitrobacter sp. Nb-311A], gi\|8...	4.0E-87	[1..325]	[1..324]
gi\|77164961, gi\|... - gi\|77164961\|ref\|YP_343486.1\| hypothetical protein Noc_1469 [Nitrosococcus oceani ATCC 19707], gi\|768... gi\|207089993 - gi\|207089993\|gb\|EDZ67264.1\| hypothetical protein NOC27_591 [Nitrosococcus oceani AFC27] gi\|224410339, gi... - gi\|254433660\|ref\|ZP_05047168.1\| hypothetical protein NOC27_591 [Nitrosococcus oceani AFC27], gi\|2244...	4.0E-87	[1..327]	[1..327]
gi\|23095254, gi\|... - gi\|25010875\|ref\|NP_735270.1\| hypothetical protein gbs0820 [Streptococcus agalactiae NEM316], gi\|2309... gi\|77160354, gi\|... - gi\|77413588\|ref\|ZP_00789775.1\| glutathione S-transferase family protein [Streptococcus agalactiae 51...	5.0E-87	[1..319]	[1..318]
gi\|77172505, gi\|... - gi\|77408866\|ref\|ZP_00785592.1\| glutathione S-transferase family protein [Streptococcus agalactiae CO...	5.0E-87	[1..319]	[1..318]

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Predicted Domain #1

Region A:
Residues: [1-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQLIDGVWH DTWYDTKSSG GKFQRSASAF RNWLTADGAP GPSGEGGFAA EKDRYHLYVS  60
   61 LACPWAHRTL IFRKLKGLEP FIPVSVVNPL MLENGWTFDD TFPAATGDTL YQHEFLYQLY 120
  121 LHADPHYSGR VTVPVLWDKK NHTIVSNESA EIIRMFNSAF DGLGAKAGDY YPPALQSKID 180
  181 ELNGWIYDNV NNGVYKAGFA TSQQAYDEAV EKVFTALARL EQILGQHRYL TGNQLTEADI 240
  241 RLWTTLVRFD PVYVTHFKCD KYRISDYLNL YGFLRDIYQI PGIAETVNMD HIRHHYFRSH 300
  301 KTINPTGIIS VGPWQDLLEP HGHDVRFG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.30103
Match:	1eemA
Description:	Class omega GST
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glutathione binding	2.07086805531749	bayes_pls_golite062009
glutathione transferase activity	1.85683051472829	bayes_pls_golite062009
antioxidant activity	1.78836688224506	bayes_pls_golite062009
peroxidase activity	1.62851025934188	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	1.62851025934188	bayes_pls_golite062009
binding	1.1101496519064	bayes_pls_golite062009
glutathione peroxidase activity	1.08052084417939	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.0279404567142	bayes_pls_golite062009
catalytic activity	0.672192331361968	bayes_pls_golite062009
peroxiredoxin activity	0.366096607480921	bayes_pls_golite062009
protein binding	0.341730456502484	bayes_pls_golite062009
selenium binding	0.237008126838281	bayes_pls_golite062009
thioredoxin peroxidase activity	0.163136748643487	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: