YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16504192, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16504192, gi|....

Description	E-value	Query Range	Subject Range
gi\|109640980, gi... - gi\|109647890\|ref\|ZP_01371793.1\| protein of unknown function DUF554 [Desulfitobacterium hafniense DCB...	9.0E-63	[2..231]	[16..241]
gi\|62129259, gi\|... - gi\|62181626\|ref\|YP_218043.1\| hypothetical protein SC3056 [Salmonella enterica subsp. enterica serova...	2.0E-61	[1..235]	[1..235]
gi\|77638827, gi\|... - gi\|77685359\|ref\|ZP_00800761.1\| Protein of unknown function DUF554 [Alkaliphilus metalliredigenes QYM...	2.0E-60	[2..224]	[34..251]
gi\|48826279 - ref\|ZP_00287501.1\| COG1811: Uncharacterized membrane protein, possible Na+ channel or pump [Enteroco... gi\|68196393, gi\|... - gi\|69244452\|ref\|ZP_00602868.1\| Protein of unknown function DUF554 [Enterococcus faecium DO], gi\|6819...	3.0E-60	[1..234]	[1..238]
gi\|219670945, gi... - gi\|219670945\|ref\|YP_002461380.1\| protein of unknown function DUF554 [Desulfitobacterium hafniense DC... gi\|89897796, gi\|... - gi\|89897796\|ref\|YP_521283.1\| hypothetical protein DSY5050 [Desulfitobacterium hafniense Y51], gi\|893...	1.0E-59	[2..231]	[1..226]
gi\|126097005, gi... - gi\|126208213\|ref\|YP_001053438.1\| hypothetical protein APL_0733 [Actinobacillus pleuropneumoniae L20]... gi\|32035543 - gi\|32035543\|ref\|ZP_00135481.1\| COG1811: Uncharacterized membrane protein, possible Na+ channel or pu...	4.0E-58	[1..235]	[1..237]
gi\|241902671, gi... - gi\|241902671\|ref\|ZP_04787403.1\| protein of unknown function DUF554 [Thermoanaerobacter brockii subsp... gi\|76796695, gi\|... - gi\|76796695\|ref\|ZP_00779050.1\| Protein of unknown function DUF554 [Thermoanaerobacter ethanolicus AT...	1.0E-57	[2..224]	[1..219]
gi\|78357531, gi\|... - gi\|78357531\|ref\|YP_388980.1\| hypothetical protein Dde_2488 [Desulfovibrio desulfuricans subsp. desul...	2.0E-57	[2..231]	[4..228]
gi\|83591329, gi\|... - gi\|83591329\|ref\|YP_431338.1\| hypothetical protein Moth_2513 [Moorella thermoacetica ATCC 39073], gi\|...	2.0E-57	[2..231]	[1..226]
gi\|20515560, gi\|... - gi\|20807071\|ref\|NP_622242.1\| hypothetical protein TTE0575 [Thermoanaerobacter tengcongensis MB4], gi... gi\|20807071 - gi\|20807071\|ref\|NP_622242.1\| uncharacterized membrane protein, possible Na+ channel or pump [Thermoa...	2.0E-56	[2..232]	[1..227]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIGPFINAG AILFGGVIGA LLSQRLPERI RVSMTSIFGL CSLGIGILLV MKCANLPVMV  60
   61 LATLVGALIG EFCLLEKGIN GAVAKIQQLF MAS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [94-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKKPTHDSFI QSYVAIIVLF CASGTGIFGA MHEGMTGDPN ILIAKSFLDF FTAIIFACSL  60
   61 GIAVSAICAP MLIIQLTLAA CATLILPLTT PAMMGDFSAV GGLLLVATGL RVCGIKMFPV 120
  121 VNMLPALLLA MPISAAWAMF FA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits