YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16504162, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16504162, gi|....

Description	E-value	Query Range	Subject Range
gi\|56480213, gi\|... - gi\|56480213\|ref\|NP_708700.2\| hypothetical protein SF2926 [Shigella flexneri 2a str. 301], gi\|5638376... gi\|30042506, gi\|... - gi\|30064249\|ref\|NP_838420.1\| hypothetical protein S3128 [Shigella flexneri 2a str. 2457T], gi\|300425...	8.0E-54	[1..252]	[43..294]
gi\|110806842, gi... - gi\|110806842\|ref\|YP_690362.1\| hypothetical protein SFV_2988 [Shigella flexneri 5 str. 8401], gi\|1106...	2.0E-53	[1..252]	[74..325]
gi\|882465\|gb\|AAA... - ORF_o294; was o219p before splice; alternate name yggG? gi\|7466944, gi\|8... - gi\|882465\|gb\|AAA69103.1\| ORF_o294; was o219p before splice; alternate name yggG?, gi\|7466944\|pir\|\|G6... gi\|16130837, gi\|... - gb\|AAC75973.1\| orf, hypothetical protein; conserved protein [Escherichia coli K12], gi\|16130837\|ref...	2.0E-53	[1..252]	[43..294]
gi\|12517478, gi\|... - gi\|15803474\|ref\|NP_289507.1\| hypothetical protein Z4280 [Escherichia coli O157:H7 EDL933], gi\|125174... gi\|13363283 - gi\|13363283\|dbj\|BAB37234.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|13363283 - gi\|13363283\|dbj\|BAB37234.1\| hypothetical protein [Escherichia coli O157:H7] gi\|209760206, gi... - pir\|\|F85950 hypothetical protein yggG [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	4.0E-53	[1..252]	[43..294]
gi\|73856970, gi\|... - gi\|74313493\|ref\|YP_311912.1\| hypothetical protein SSON_3090 [Shigella sonnei Ss046], gi\|73856970\|gb\|... gi\|82545440, gi\|... - gi\|82545440\|ref\|YP_409387.1\| hypothetical protein SBO_3053 [Shigella boydii Sb227], gi\|81246851\|gb\|A...	4.0E-53	[1..252]	[43..294]
gi\|62129222, gi\|... - gi\|62181589\|ref\|YP_218006.1\| putative Zn-dependent protease with chaperone function [Salmonella ente...	5.0E-53	[1..252]	[1..252]
gi\|115514289, gi... - gi\|117625165\|ref\|YP_854153.1\| putative metalloprotease YggG [Escherichia coli APEC O1], gi\|115514289...	6.0E-53	[1..252]	[43..294]
gi\|91212317, gi\|... - gi\|91212317\|ref\|YP_542303.1\| putative metalloprotease YggG [Escherichia coli UTI89], gi\|91073891\|gb\|... gi\|237706413, gi... - gi\|237706413\|ref\|ZP_04536894.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|26249356, gi\|... - gi\|26249356\|ref\|NP_755396.1\| putative metalloprotease yggG [Escherichia coli CFT073], gi\|26109764\|gb...	7.0E-53	[1..252]	[74..325]
gi\|110344677, gi... - gi\|110643085\|ref\|YP_670815.1\| putative metalloprotease YggG [Escherichia coli 536], gi\|110344677\|gb\|...	2.0E-52	[1..252]	[43..294]
gi\|197095429, gi... - gi\|197363952\|ref\|YP_002143589.1\| hypothetical protein SSPA2747 [Salmonella enterica subsp. enterica ... gi\|56415023, gi\|... - gi\|56415023\|ref\|YP_152098.1\| hypothetical protein SPA2948 [Salmonella enterica subsp. enterica serov...	2.0E-52	[1..252]	[1..252]

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Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIRALLLAL GMATVLTGCQ NMDSNGLLSS GAEAFQAYTL SDAQVKALSD QSCQELDSKA  60
   61 KIAPASSEYT KRLAKIAAAL GDNINGQPVN YKVYETKDVN AFAMANGCIR VYSGLMDMMT 120
  121 DNEVEAVIGH EMGHVALGHV KKGMQVALGT NAVRVAAASA GGVVGSLSQS QLGDLGEKLV 180
  181 NSQFSQRQES EADDYSYDLL RKRGISPAGL ATSFEKLAKL EAGRQSSMFD DHPASAARAQ 240
  241 HVRDRMSADG IK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.23
Match:	1dmtA
Description:	Neutral endopeptidase (neprilysin)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits