YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16761841
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16761841.

Description	E-value	Query Range	Subject Range
gi\|77978890 - gi\|77978890\|ref\|ZP_00834313.1\| COG3027: Uncharacterized protein conserved in bacteria [Yersinia inte...	1.0E-27	[1..109]	[57..165]
ZAPA_ERWCT - Cell division protein ZapA OS=Erwinia carotovora subsp. atroseptica GN=zapA PE=3 SV=1 ZAPA_PECAS - Cell division protein ZapA OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=zapA ...	2.0E-24	[1..109]	[1..109]
gi\|238785667, gi... - gi\|77956687\|ref\|ZP_00820770.1\| COG3027: Uncharacterized protein conserved in bacteria [Yersinia berc...	2.0E-24	[1..109]	[20..128]
gi\|189358696, gi... - gi\|189358696\|gb\|EDU77115.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|188017809, gi... - gi\|188017809\|gb\|EDU55931.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189363824, gi... - gi\|189363824\|gb\|EDU82243.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189369355, gi... - gi\|189369355\|gb\|EDU87771.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189377683, gi... - gi\|189377683\|gb\|EDU96099.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168785760, gi... - gi\|189374014\|gb\|EDU92430.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|194431678, gi... - gi\|194431678\|ref\|ZP_03063969.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19442... gi\|170765585, gi... - gi\|170765585\|ref\|ZP_02900396.1\| conserved hypothetical protein [Escherichia albertii TW07627], gi\|17... ZAPA_ECO57 - Cell division protein ZapA OS=Escherichia coli O157:H7 GN=zapA PE=3 SV=1 gi\|30064221, gi\|... - gi\|30064221\|ref\|NP_838392.1\| Z-ring-associated protein [Shigella flexneri 2a str. 2457T], gi\|3004247... gi\|15803445, gi\|... - gi\|15803445\|ref\|NP_289478.1\| Z-ring-associated protein [Escherichia coli O157:H7 EDL933], gi\|1251744... EG12878 - FtsZ stabilizer / FtsZ stabilizer, coiled-coil protein ZAPA_ECOLX - Cell division protein ZapA OS=Escherichia coli GN=zapA PE=3 SV=1 gi\|194426374, gi... - gi\|75212475\|ref\|ZP_00712499.1\| COG3027: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|192930844, gi... - gi\|75258510\|ref\|ZP_00729932.1\| COG3027: Uncharacterized protein conserved in bacteria [Escherichia c... ZAPA_ECO24 - Cell division protein ZapA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=zapA PE=3 SV=1 ZAPA_ECOHS - Cell division protein ZapA OS=Escherichia coli O9:H4 (strain HS) GN=zapA PE=3 SV=1 ZAPA_SHIBS - Cell division protein ZapA OS=Shigella boydii serotype 4 (strain Sb227) GN=zapA PE=3 SV=1 gi\|85675722, gi\|... - gi\|89109689\|ref\|AP_003469.1\| protein that localizes to the cytokinetic ring [Escherichia coli str. K... gi\|188488911, gi... - gi\|75515306\|ref\|ZP_00737490.1\| COG3027: Uncharacterized protein conserved in bacteria [Escherichia c... ZAPA_SHISS - Cell division protein ZapA OS=Shigella sonnei (strain Ss046) GN=zapA PE=3 SV=1 ZAPA_SHIFL - Cell division protein ZapA OS=Shigella flexneri GN=zapA PE=3 SV=1 gi\|194436691, gi... - gi\|83587694\|ref\|ZP_00926321.1\| COG3027: Uncharacterized protein conserved in bacteria [Escherichia c... ZAPA_SHIB3 - Cell division protein ZapA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=zapA PE=3 ... ZAPA_ECOL6 - Cell division protein ZapA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=zapA PE... gi\|24114163, gi\|... - gi\|24114163\|ref\|NP_708673.1\| Z-ring-associated protein [Shigella flexneri 2a str. 301], gi\|24053304\|... ZAPA_ECODH - Cell division protein ZapA OS=Escherichia coli (strain K12 / DH10B) GN=zapA PE=3 SV=1 ZAPA_ECOLC - Cell division protein ZapA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=zapA PE=3 S... ZAPA_ECOSM - Cell division protein ZapA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=zapA PE=3 SV=1 gi\|227888460, gi... - gi\|227888460\|ref\|ZP_04006265.1\| Z-ring-associated protein [Escherichia coli 83972], gi\|227834729\|gb\|... gi\|237706442, gi... - gi\|237706442\|ref\|ZP_04536923.1\| Z-ring associated protein [Escherichia sp. 3_2_53FAA], gi\|226899482\|... ZAPA_ECOL5 - Cell division protein ZapA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=zapA PE=3 SV=1 ZAPA_ECOBW - Cell division protein ZapA OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=zapA PE=3 SV=1 ZAPA_SHIF8 - Cell division protein ZapA OS=Shigella flexneri serotype 5b (strain 8401) GN=zapA PE=3 SV=1 gi\|242378441, gi... - gi\|251786168\|ref\|YP_003000472.1\| hypothetical protein B21_02705 [Escherichia coli BL21], gi\|24237844... gi\|253772249, gi... - gi\|254289582\|ref\|YP_003055330.1\| cytokinetic ring-localizing protein [Escherichia coli BL21(DE3)], g... gi\|254037957, gi... - gi\|254037957\|ref\|ZP_04872015.1\| cell division protein zapA [Escherichia sp. 1_1_43], gi\|226839581\|gb... gi\|254162822, gi... - gi\|254162822\|ref\|YP_003045930.1\| cytokinetic ring-localizing protein [Escherichia coli B str. REL606... gi\|254594259, gi... - gi\|254794859\|ref\|YP_003079696.1\| protein that localizes to the cytokinetic ring [Escherichia coli O1... ZAPA_ECOUT - Cell division protein ZapA OS=Escherichia coli (strain UTI89 / UPEC) GN=zapA PE=3 SV=1 gi\|13363253, gi\|... - gi\|15833035\|ref\|NP_311808.1\| Z-ring-associated protein [Escherichia coli O157:H7 str. Sakai], gi\|133... ZAPA_ECO8A - Cell division protein ZapA OS=Escherichia coli O8 (strain IAI1) GN=zapA PE=3 SV=1 ZAPA_ESCF3 - Cell division protein ZapA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) G... ZAPA_ECO81 - Cell division protein ZapA OS=Escherichia coli O81 (strain ED1a) GN=zapA PE=3 SV=1 ZAPA_ECO45 - Cell division protein ZapA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=zapA PE=3 SV=1 ZAPA_ECO7I - Cell division protein ZapA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=zapA PE=3 SV=1 ZAPA_ECO55 - Cell division protein ZapA OS=Escherichia coli (strain 55989 / EAEC) GN=zapA PE=3 SV=1 YGFE_ECOL6, ZAPA... - Cell division protein ZapA OS=Escherichia coli O6 GN=zapA PE=3 SV=1, Uncharacterized protein ygfE - ... ZAPA_ECOK1 - Cell division protein ZapA OS=Escherichia coli O1:K1 / APEC GN=zapA PE=3 SV=1 gi\|124526184, gi... - gi\|124526184\|ref\|ZP_01698189.1\| protein of unknown function DUF710 [Escherichia coli B], gi\|12450228... ZAPA_ECOLU - Cell division protein ZapA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=zapA PE=3 SV=1 gi\|208807648, gi... - gi\|208807648\|ref\|ZP_03249985.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195936528 - gi\|195936528\|ref\|ZP_03081910.1\| Z-ring-associated protein [Escherichia coli O157:H7 str. EC4024] gi\|208738709, gi... - gi\|208818586\|ref\|ZP_03258906.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208814173, gi... - gi\|208814173\|ref\|ZP_03255502.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... ZAPA_ECOSE - Cell division protein ZapA OS=Escherichia coli (strain SE11) GN=zapA PE=3 SV=1 ZAPA_ECO5E - Cell division protein ZapA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=zapA PE=3 SV=1 gi\|217319551, gi... - gi\|217327184\|ref\|ZP_03443267.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... sp\|B7UHV8\|ZAPA_ECO27 - Cell division protein ZapA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=zapA PE=3 SV=1 ZAPA_ECO27 - Cell division protein ZapA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=zapA PE=3 SV=1 gi\|73671316\|gb\|A... - ZapA [Escherichia coli] EG12878 - FtsZ stabilizer / FtsZ stabilizer, coiled-coil protein	4.0E-24	[1..109]	[1..109]
ZAPA_SHIDS - Cell division protein ZapA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=zapA PE=3 SV=1	7.0E-24	[1..109]	[1..109]
ZAPA_SODGM - Cell division protein ZapA OS=Sodalis glossinidius (strain morsitans) GN=zapA PE=3 SV=1	9.0E-24	[1..109]	[1..109]
ZAPA_YERE8 - Cell division protein ZapA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 /... gi\|77974491, gi\|... - gi\|77974491\|ref\|ZP_00830031.1\| COG3027: Uncharacterized protein conserved in bacteria [Yersinia fred... gi\|77961471 - gi\|77961471\|ref\|ZP_00825307.1\| COG3027: Uncharacterized protein conserved in bacteria [Yersinia moll... gi\|238795125, gi... - gi\|238795125\|ref\|ZP_04638715.1\| Cell division protein zapA [Yersinia intermedia ATCC 29909], gi\|2387... gi\|238707211, gi... - gi\|238754580\|ref\|ZP_04615934.1\| Cell division protein zapA [Yersinia ruckeri ATCC 29473], gi\|2387072...	3.0E-23	[1..109]	[1..109]
gi\|22127175, gi\|... - gi\|22127175\|ref\|NP_670598.1\| Z-ring-associated protein [Yersinia pestis KIM], gi\|21960239\|gb\|AAM8684... gi\|45438212, gi\|... - gi\|45443343\|ref\|NP_994882.1\| Z-ring-associated protein [Yersinia pestis biovar Microtus str. 91001],...	4.0E-23	[1..109]	[17..125]
ZAPA_YERPS - Cell division protein ZapA OS=Yersinia pseudotuberculosis GN=zapA PE=3 SV=1 gi\|229690926, gi... - gi\|229842616\|ref\|ZP_04462771.1\| protein that localizes to the cytokinetic ring [Yersinia pestis biov... ZAPA_YERPG - Cell division protein ZapA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=zapA PE=3 SV=1 gi\|229697190, gi... - gi\|229840824\|ref\|ZP_04460983.1\| protein that localizes to the cytokinetic ring [Yersinia pestis biov... ZAPA_YERP3 - Cell division protein ZapA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=zapA PE... gi\|229837600, gi... - gi\|229837600\|ref\|ZP_04457762.1\| protein that localizes to the cytokinetic ring [Yersinia pestis Pest... gi\|165925019, gi... - gi\|165925019\|ref\|ZP_02220851.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166010296, gi... - gi\|166010296\|ref\|ZP_02231194.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166212715, gi... - gi\|166212715\|ref\|ZP_02238750.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167399766, gi... - gi\|167399766\|ref\|ZP_02305284.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167419349, gi... - gi\|167419349\|ref\|ZP_02311102.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167055646, gi... - gi\|167425246\|ref\|ZP_02316999.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|89104317, gi\|... - gi\|89104317\|ref\|ZP_01176863.1\| COG3027: Uncharacterized protein conserved in bacteria [Yersinia pest... ZAPA_YERPA - Cell division protein ZapA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=zapA PE=3 SV=1 ZAPA_YERPN - Cell division protein ZapA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=zapA PE=3 SV=1 ZAPA_YERPE - Cell division protein ZapA OS=Yersinia pestis GN=zapA PE=3 SV=1 gi\|218928085, gi... - gi\|218928085\|ref\|YP_002345960.1\| Z-ring-associated protein [Yersinia pestis CO92], gi\|16121217\|ref\|N... ZAPA_YERPS - Cell division protein ZapA OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=zapA PE=3 S... ZAPA_YERPB - Cell division protein ZapA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=zapA PE=3 SV... ZAPA_YERPY - Cell division protein ZapA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=zapA PE=3 S... gi\|145209605, gi... - gi\|145597909\|ref\|YP_001161985.1\| Z-ring-associated protein [Yersinia pestis Pestoides F], gi\|1452096...	2.0E-22	[1..109]	[1..109]
gi\|33504068, gi\|... - gi\|33519723\|ref\|NP_878555.1\| Z-ring-associated protein [Candidatus Blochmannia floridanus], gi\|33504...	3.0E-22	[1..109]	[1..109]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQPVDIQI FGRSLRVNCP PDQRDALNQA ADDLNQRLQD LKVRTRVTNT EQLVFIAALN  60
   61 ISYELTQEKA KTRDYAASME QRIRMLQQTI EQALLDQGRI TEKTGQNFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.30103
Match:	1t3uA
Description:	Unknown conserved bacterial protein from Pseudomonas aeruginosa PAO1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits