YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29143316, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	326 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29143316, gi|....

Description	E-value	Query Range	Subject Range
GCST_THETN - Aminomethyltransferase OS=Thermoanaerobacter tengcongensis GN=gcvT PE=3 SV=1 GCST_CALS4 - Aminomethyltransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM... gi\|214035115, gi... - gi\|254478933\|ref\|ZP_05092294.1\| glycine cleavage system T protein [Carboxydibrachium pacificum DSM 1...	0.0	[1..319]	[34..364]
GCST_HALOH - Aminomethyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvT PE=3 SV...	4.0E-96	[1..322]	[25..356]
GCST_SHEAM - Aminomethyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gcvT PE=3 SV=1	2.0E-95	[1..323]	[26..357]
gi\|47555460, gi\|... - gi\|47567783\|ref\|ZP_00238491.1\| glycine cleavage system T protein [Bacillus cereus G9241], gi\|4755546...	3.0E-95	[1..322]	[28..361]
gi\|228648434, gi... - gi\|229135049\|ref\|ZP_04263854.1\| Aminomethyltransferase [Bacillus cereus BDRD-ST196], gi\|228648434\|gb... gi\|229013446, gi... - gi\|229013446\|ref\|ZP_04170583.1\| Aminomethyltransferase [Bacillus mycoides DSM 2048], gi\|228747858\|gb... GCST_BACWK - Aminomethyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=gcvT PE=3 SV=1	3.0E-95	[1..322]	[28..361]
gi\|229140961, gi... - gi\|229140961\|ref\|ZP_04269505.1\| Aminomethyltransferase [Bacillus cereus BDRD-ST26], gi\|228642537\|gb\|... GCST_BACCQ - Aminomethyltransferase OS=Bacillus cereus (strain Q1) GN=gcvT PE=3 SV=1 GCST_BACC1 - Aminomethyltransferase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=gcvT PE=3 SV=1 GCST_BACC7 - Aminomethyltransferase OS=Bacillus cereus (strain AH187) GN=gcvT PE=3 SV=1	4.0E-95	[1..322]	[28..361]
gi\|195992402, gi... - gi\|196034863\|ref\|ZP_03102270.1\| glycine cleavage system T protein [Bacillus cereus W], gi\|195992402\|... GCST_BACCZ - Aminomethyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=gcvT PE=3 SV=1	5.0E-95	[1..322]	[28..361]
GCST_THEPX - Aminomethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=gcvT PE=3 SV=1 gi\|242256016, gi... - gi\|242256016\|ref\|ZP_04800914.1\| glycine cleavage system T protein [Thermoanaerobacter sp. X513], gi\|...	7.0E-95	[1..318]	[28..357]
GCST_THEP3 - Aminomethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvT PE=3... gi\|241885038, gi... - gi\|241902576\|ref\|ZP_04787309.1\| glycine cleavage system T protein [Thermoanaerobacter brockii subsp....	1.0E-94	[1..318]	[28..357]
GCST_BACCN - Aminomethyltransferase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98)...	2.0E-94	[1..322]	[28..361]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFISFPPRH PSSSARLPLT LIALDDWALS SITGVDSEKY IQGQVTADVS QMTEQQHLLA  60
   61 AHCDAKGKMW STLRLFRERD GFAWIERRSV REAQLTELKK YAVFSKVVIA PDDERVLLGV 120
  121 AGFQARAALA NVFSELPNSE NQVVRDGAST LLWFEHPAER FLLVTDVATA NMLTEKLHGE 180
  181 AELNNSQQWL ALDIEAGIPV IDAANSGQFI PQATNLQALG GISFKKGCYT GQEMVARAKF 240
  241 RGANKRALWL LAGKASRVPE AGEDLELQMG ENWRRTGAIL AATQLDDGQL LVQAVMNNDL 300
  301 EAESVFRVRD DANTLHIVPL PYSLEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.69897
Match:	1vlyA
Description:	Crystal structure of Unknown protein from 2D-page (Spot PR51) (b2898) from Escherichia coli k12 at 1.30 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	2.71219746860743	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	2.63021060808724	bayes_pls_golite062009
catalytic activity	1.65079399897053	bayes_pls_golite062009
transferase activity	1.3676947912529	bayes_pls_golite062009
binding	0.132837587724643	bayes_pls_golite062009
aminomethyltransferase activity	0.0576067162699821	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: