YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29143292, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29143292, gi|....

Description	E-value	Query Range	Subject Range
gi\|206710097, gi... - gi\|207858294\|ref\|YP_002244945.1\| hypothetical protein SEN2874 [Salmonella enterica subsp. enterica s... gi\|224584821, gi... - gi\|224584821\|ref\|YP_002638619.1\| hypothetical protein SPC_3090 [Salmonella enterica subsp. enterica ... gi\|197938208, gi... - gi\|198243692\|ref\|YP_002217008.1\| YfdX protein [Salmonella enterica subsp. enterica serovar Dublin st... gi\|200388252, gi... - gi\|200388252\|ref\|ZP_03214864.1\| YfdX protein [Salmonella enterica subsp. enterica serovar Virchow st... gi\|194446773, gi... - gi\|194446773\|ref\|YP_002042283.1\| YfdX protein [Salmonella enterica subsp. enterica serovar Newport s... gi\|197265592, gi... - gi\|197265592\|ref\|ZP_03165666.1\| YfdX protein [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|16766332, gi\|... - gi\|16766332\|ref\|NP_461947.1\| hypothetical protein STM3030 [Salmonella typhimurium LT2], gi\|16421581\|... gi\|205349139, gi... - gi\|205349139\|gb\|EDZ35770.1\| YfdX protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|195633649, gi... - gi\|195633649\|gb\|EDX52063.1\| YfdX protein [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|161936218 - gi\|161936218\|ref\|YP_152053.2\| hypothetical protein SPA2898 [Salmonella enterica subsp. enterica sero... gi\|205327982, gi... - gi\|205327982\|gb\|EDZ14746.1\| YfdX protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|161365339, gi... - gi\|161615975\|ref\|YP_001589940.1\| hypothetical protein SPAB_03774 [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=STM14_3660] [protein=hypothetical protein] [protein_id=YP_005239165.1] [location=complement(32...	6.0E-99	[1..199]	[12..210]
gi\|62129173, gi\|... - gi\|62181540\|ref\|YP_217957.1\| hypothetical protein SC2970 [Salmonella enterica subsp. enterica serova...	2.0E-98	[1..199]	[12..210]
gi\|56414978, gi\|... - gi\|56414978\|ref\|YP_152053.1\| hypothetical protein SPA2898 [Salmonella enterica subsp. enterica serov... gi\|197363907, gi... - gi\|197363907\|ref\|YP_002143544.1\| hypothetical protein SSPA2701 [Salmonella enterica subsp. enterica ...	6.0E-98	[1..199]	[1..199]
gi\|157067528, gi... - gi\|75196399\|ref\|ZP_00706469.1\| COG1511: Predicted membrane protein [Escherichia coli HS], gi\|1571618... gi\|75210166, gi\|... - gi\|75210166\|ref\|ZP_00710338.1\| COG1511: Predicted membrane protein [Escherichia coli B171], gi\|19442... gi\|187730915, gi... - gi\|75177849\|ref\|ZP_00697911.1\| COG1511: Predicted membrane protein [Shigella boydii BS512], gi\|18773... gi\|75187141, gi\|... - gi\|75187141\|ref\|ZP_00700408.1\| COG1511: Predicted membrane protein [Escherichia coli E24377A], gi\|15... gi\|75515722, gi\|... - gi\|75515722\|ref\|ZP_00737857.1\| COG1511: Predicted membrane protein [Escherichia coli 53638], gi\|1884... gi\|81241927, gi\|... - gi\|82777779\|ref\|YP_404128.1\| hypothetical protein SDY_2573 [Shigella dysenteriae Sd197], gi\|81241927... gi\|190904486, gi... - gi\|75231336\|ref\|ZP_00717724.1\| COG1511: Predicted membrane protein [Escherichia coli B7A], gi\|191165... gi\|192931910, gi... - gi\|75259818\|ref\|ZP_00731120.1\| COG1511: Predicted membrane protein [Escherichia coli E22], gi\|193062... gi\|218696017, gi... - gi\|218696017\|ref\|YP_002403684.1\| hypothetical protein EC55989_2669 [Escherichia coli 55989], gi\|2183... gi\|81246254, gi\|... - gi\|82544843\|ref\|YP_408790.1\| hypothetical protein SBO_2401 [Shigella boydii Sb227], gi\|81246254\|gb\|A... gi\|209919863, gi... - gi\|209919863\|ref\|YP_002293947.1\| hypothetical protein ECSE_2672 [Escherichia coli SE11], gi\|20991312... gi\|218361685, gi... - gi\|218554917\|ref\|YP_002387830.1\| hypothetical protein ECIAI1_2440 [Escherichia coli IAI1], gi\|218361... gi\|242377993, gi... - gi\|251785720\|ref\|YP_003000024.1\| hypothetical protein B21_02246 [Escherichia coli BL21], gi\|24237799... gi\|253974269, gi... - gi\|254162368\|ref\|YP_003045476.1\| hypothetical protein ECB_02285 [Escherichia coli B str. REL606], gi... gi\|169754261, gi... - gi\|170019333\|ref\|YP_001724287.1\| hypothetical protein EcolC_1294 [Escherichia coli ATCC 8739], gi\|16... gi\|253323760, gi... - gi\|254289129\|ref\|YP_003054877.1\| hypothetical protein ECD_02285 [Escherichia coli BL21(DE3)], gi\|253... gi\|194418808, gi... - gi\|83570026\|ref\|ZP_00921473.1\| COG1511: Predicted membrane protein [Shigella dysenteriae 1012], gi\|1... gi\|194424859, gi... - gi\|83588378\|ref\|ZP_00927003.1\| COG1511: Predicted membrane protein [Escherichia coli 101-1], gi\|1944... gi\|124501993, gi... - gi\|124526522\|ref\|ZP_01698475.1\| conserved hypothetical protein [Escherichia coli B], gi\|124501993\|gb...	3.0E-77	[19..185]	[41..207]
gi\|75237942, gi\|... - gi\|75237942\|ref\|ZP_00721949.1\| COG1511: Predicted membrane protein [Escherichia coli F11], gi\|191173... gi\|227835774, gi... - gi\|227887424\|ref\|ZP_04005229.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783577... gi\|26248753, gi\|... - gi\|26248753\|ref\|NP_754793.1\| hypothetical protein c2911 [Escherichia coli CFT073], gi\|26109159\|gb\|AA... gi\|218690518, gi... - gi\|218690518\|ref\|YP_002398730.1\| hypothetical protein ECED1_2822 [Escherichia coli ED1a], gi\|2184280...	3.0E-77	[20..185]	[42..207]
gi\|192956935, gi... - gi\|75235564\|ref\|ZP_00719755.1\| COG1511: Predicted membrane protein [Escherichia coli E110019], gi\|19...	8.0E-77	[19..185]	[41..207]
gi\|24052811, gi\|... - gi\|24113736\|ref\|NP_708246.1\| hypothetical protein SF2442 [Shigella flexneri 2a str. 301], gi\|2405281... gi\|30042036, gi\|... - gi\|30063781\|ref\|NP_837952.1\| hypothetical protein S2579 [Shigella flexneri 2a str. 2457T], gi\|300420... gi\|74312923, gi\|... - gi\|74312923\|ref\|YP_311342.1\| hypothetical protein SSON_2466 [Shigella sonnei Ss046], gi\|73856400\|gb\|... gi\|110806328, gi... - gi\|110806328\|ref\|YP_689848.1\| hypothetical protein SFV_2434 [Shigella flexneri 5 str. 8401], gi\|1106...	2.0E-76	[24..185]	[43..204]
gi\|189366353, gi... - gi\|189366353\|gb\|EDU84769.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|15802917, gi\|... - gi\|15802917\|ref\|NP_288945.1\| hypothetical protein Z3640 [Escherichia coli O157:H7 EDL933], gi\|125167... gi\|226901266, gi... - gi\|237704900\|ref\|ZP_04535381.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|218559330, gi... - gi\|218559330\|ref\|YP_002392243.1\| hypothetical protein ECS88_2570 [Escherichia coli S88], gi\|21836609... YFDX_ECO57 - Protein YfdX OS=Escherichia coli O157:H7 GN=yfdX PE=3 SV=1 gi\|217326662, gi... - gi\|217326662\|ref\|ZP_03442745.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|91073292, gi\|... - gi\|91211718\|ref\|YP_541704.1\| hypothetical protein UTI89_C2707 [Escherichia coli UTI89], gi\|91073292\|... gi\|168800712, gi... - gi\|189377058\|gb\|EDU95474.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|15832509, gi\|... - gi\|15832509\|ref\|NP_311282.1\| hypothetical protein ECs3255 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189372955, gi... - gi\|189372955\|gb\|EDU91371.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|209764494, gi... - pir\|\|A85880 hypothetical protein Z3640 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|115513717, gi... - gi\|117624593\|ref\|YP_853506.1\| hypothetical protein APECO1_4161 [Escherichia coli APEC O1], gi\|115513...	2.0E-76	[21..185]	[44..208]
YFDX_ECOLI - Protein yfdX precursor - Escherichia coli gi\|170081990, gi... - gi\|170081990\|ref\|YP_001731310.1\| hypothetical protein ECDH10B_2540 [Escherichia coli str. K-12 subst... EG14146 - uncharacterized protein / Secreted protein, function unknown gi\|238862900, gi... - gi\|238901544\|ref\|YP_002927340.1\| hypothetical protein BWG_2143 [Escherichia coli BW2952], gi\|2388629... gi\|89109195, gi\|... - gi\|89109195\|ref\|AP_002975.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG14146 - uncharacterized protein / Secreted protein, function unknown	3.0E-76	[21..185]	[44..208]
gi\|110642564, gi... - gi\|110642564\|ref\|YP_670294.1\| hypothetical protein ECP_2400 [Escherichia coli 536], gi\|110344156\|gb\|...	2.0E-70	[34..185]	[1..152]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVILFSGNLM AATNMTDNVT LNNDKISGQA WQAMRDIGMS RFELFNGRTQ KAEQLAAQAE  60
   61 KLLNDDSTDW NLYVKSDKKA PVEGDHYIRI NSSITVAEDY LPAGQKNDAI NKANQKMKEG 120
  121 DKKGTIEALK LAGVSVIENQ ELIPLQQTRK DVTTALSLMN EGKYYQAGLL LKSAQDGIVV 180
  181 DSQSVQESPT HPVQHDAAH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits