YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16761718
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16761718.

Description	E-value	Query Range	Subject Range
CYSH_SALCH - Phosphoadenosine phosphosulfate reductase OS=Salmonella choleraesuis GN=cysH PE=3 SV=1 CYSH_SALCH - Phosphoadenosine phosphosulfate reductase OS=Salmonella choleraesuis (strain SC-B67) GN=cysH PE=3 SV... CYSH_SALCH - Phosphoadenosine phosphosulfate reductase OS=Salmonella choleraesuis GN=cysH PE=3 SV=1	3.0E-55	[1..244]	[1..244]
CYSH_SALPK - Phosphoadenosine phosphosulfate reductase OS=Salmonella paratyphi A (strain AKU_12601) GN=cysH PE=3 ... CYSH_SALPA - Phosphoadenosine phosphosulfate reductase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=c... CYSH_SALPA - Phosphoadenosine phosphosulfate reductase OS=Salmonella paratyphi A GN=cysH PE=3 SV=1	1.0E-54	[1..244]	[1..244]
lcl\|NC_016856.1_... - [gene=cysH] [protein=phosphoadenosine phosphosulfate reductase] [protein_id=YP_005239060.1] [locatio... CYSH_SALTY - Phosphoadenosine phosphosulfate reductase OS=Salmonella typhimurium GN=cysH PE=3 SV=3 gi\|205328716, gi... - gi\|205328716\|gb\|EDZ15480.1\| phosphoadenosine phosphosulfate reductase [Salmonella enterica subsp. en... gi\|168261920, gi... - gi\|205349197\|gb\|EDZ35828.1\| phosphoadenosine phosphosulfate reductase [Salmonella enterica subsp. en... gi\|199604862, gi... - gi\|200387764\|ref\|ZP_03214376.1\| phosphoadenosine phosphosulfate reductase [Salmonella enterica subsp... CYSH_SALTY - Phosphoadenosine phosphosulfate reductase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70... CYSH_SALTY - Phosphoadenosine phosphosulfate reductase OS=Salmonella typhimurium GN=cysH PE=3 SV=3	2.0E-54	[1..244]	[1..244]
gi\|242378310, gi... - gi\|251786037\|ref\|YP_003000341.1\| hypothetical protein B21_02570 [Escherichia coli BL21], gi\|24237831... gi\|254289447, gi... - gi\|254289447\|ref\|YP_003055195.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli BL21(DE... gi\|253974589, gi... - gi\|254162688\|ref\|YP_003045796.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli B str. ... gi\|145682 - gi\|145682\|gb\|AAA23652.1\| 3'-phosphoadenosine-5'-phosphosulfate sulfotransferase gi\|194438951, gi... - gi\|83585586\|ref\|ZP_00924229.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS...	9.0E-54	[1..244]	[1..244]
gi\|208812546, gi... - gi\|208812546\|ref\|ZP_03253875.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 ... gi\|208740444, gi... - gi\|208820321\|ref\|ZP_03260641.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 ... CYSH_ECO5E - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=cysH... gi\|217327277, gi... - gi\|217327277\|ref\|ZP_03443360.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 ... gi\|168788019, gi... - gi\|189372194\|gb\|EDU90610.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 str.... gi\|189377454, gi... - gi\|189377454\|gb\|EDU95870.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 str.... gi\|195939476 - gi\|195939476\|ref\|ZP_03084858.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 ... gi\|208807746, gi... - gi\|208807746\|ref\|ZP_03250083.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 ... gi\|189366864, gi... - gi\|189366864\|gb\|EDU85280.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 str.... gi\|168768857, gi... - gi\|189362150\|gb\|EDU80569.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 str.... gi\|187769581, gi... - gi\|187769581\|gb\|EDU33425.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 str.... gi\|189003549, gi... - gi\|189003549\|gb\|EDU72535.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 str.... gi\|209761648, gi... - pir\|\|B85926 3'-phosphoadenosine 5'-phosphosulfate reductase [imported] - Escherichia coli (strain O1... gi\|13363088, gi\|... - gi\|15832871\|ref\|NP_311644.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 str... gi\|12517223, gi\|... - gi\|15803280\|ref\|NP_289312.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 EDL... gi\|168749910, gi... - gi\|188015787\|gb\|EDU53909.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 str.... CYSH_ECO57 - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli O157:H7 GN=cysH PE=3 SV=3 gi\|168755510, gi... - gi\|189357318\|gb\|EDU75737.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli O157:H7 str.... gi\|254794703, gi... - gi\|254794703\|ref\|YP_003079540.1\| 3'-phosphoadenosine 5'-phosphosulfate reductase [Escherichia coli O...	1.0E-53	[1..244]	[1..244]
gi\|188495666, gi... - gi\|75512331\|ref\|ZP_00734883.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... CYSH_ECOL6 - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli O6 GN=cysH PE=3 SV=3 gi\|190908459, gi... - gi\|75241855\|ref\|ZP_00725674.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... CYSH_ECO27 - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=cy... gi\|254037811, gi... - gi\|254037811\|ref\|ZP_04871869.1\| phosphoadenosine phosphosulfate reductase [Escherichia sp. 1_1_43], ... gi\|227888298, gi... - gi\|227888298\|ref\|ZP_04006103.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli 83972], ... CYSH_ECOL5 - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=cysH... sp\|B7UHH4\|CYSH_ECO27 - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=cy... CYSH_ECOL6 - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / U...	1.0E-53	[1..244]	[1..244]
CYSH_SHISS - Phosphoadenosine phosphosulfate reductase OS=Shigella sonnei (strain Ss046) GN=cysH PE=3 SV=1 CYSH_SHIBS - Phosphoadenosine phosphosulfate reductase OS=Shigella boydii serotype 4 (strain Sb227) GN=cysH PE=3 ... CYSH_SHIB3 - Phosphoadenosine phosphosulfate reductase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512... CYSH_ECOHS - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli O9:H4 (strain HS) GN=cysH PE=3 SV=1	1.0E-53	[1..244]	[1..244]
gi\|238896235, gi... - gi\|238896235\|ref\|YP_002920971.1\| phosphoadenosine phosphosulfate reductase [Klebsiella pneumoniae NT... gi\|110180263 - gi\|110180263\|gb\|ABG54372.1\| PAPS reductase [Klebsiella pneumoniae] CYSH_KLEP7 - Phosphoadenosine phosphosulfate reductase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 70...	2.0E-53	[1..244]	[1..244]
CYSH_ESCF3 - Phosphoadenosine phosphosulfate reductase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 /... EG10189 - phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent / Phosphoadenosine ... CYSH_ECOLU - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN... CYSH_ECOBW - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=cysH... CYSH_ECOLI - Phosphoadenosine phosphosulfate reductase (EC 1.8.4.8) (PAPS reductase, thioredoxin dependent) (PAdo... EG10189 - phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent / Phosphoadenosine ... CYSH_ECOLC - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks)... gi\|89109549, gi\|... - gi\|89109549\|ref\|AP_003329.1\| 3'-phosphoadenosine 5'-phosphosulfate reductase [Escherichia coli str. ... CYSH_ECODH - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli (strain K12 / DH10B) GN=cysH PE=3 SV=1 gi\|124498520, gi... - gi\|124531506\|ref\|ZP_01701760.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli B], gi\|1...	2.0E-53	[1..244]	[1..244]
CYSH_ECO45 - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=cysH PE... CYSH_ECO81 - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli O81 (strain ED1a) GN=cysH PE=3 SV=1 CYSH_ECOK1 - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli O1:K1 / APEC GN=cysH PE=3 SV=1 CYSH_ECOUT - Phosphoadenosine phosphosulfate reductase OS=Escherichia coli (strain UTI89 / UPEC) GN=cysH PE=3 SV=... gi\|226899655, gi... - gi\|237706615\|ref\|ZP_04537096.1\| phosphoadenosine phosphosulfate reductase [Escherichia sp. 3_2_53FAA...	2.0E-53	[1..244]	[1..244]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLDLNALN ELPKVDRVLA LAETNAQLET LTAEERVAWA LENLPGEYVL SSSFGIQAAV  60
   61 SLHLVNQIRP DIPVILTDTG YLFPETYQFI DELTDKLKLN LKVYRAGESP AWQEARYGKL 120
  121 WEQGVEGIEK YNEINKVEPM NRALKELNAQ TWFAGLRREQ SGSRAHLPVL AIQRGVFKVL 180
  181 PIIDWDNRTV YQYLQKHGLK YHPLWAQGYL SVGDTHTTRK WEPGMAEEET RFFGLKRECG 240
  241 LHEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.522879
Match:	2o8vA
Description:	No description for 2o8vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits