YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25324739, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	746 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25324739, gi|....

Description	E-value	Query Range	Subject Range
gi\|197363722, gi... - gi\|197363722\|ref\|YP_002143359.1\| hydrogenase maturation protein [Salmonella enterica subsp. enterica... gi\|56414794, gi\|... - gi\|56414794\|ref\|YP_151869.1\| hydrogenase maturation protein [Salmonella enterica subsp. enterica ser...	793.0	[0..1]	[746..1]
gi\|16766148, gi\|... - gi\|16766148\|ref\|NP_461763.1\| hydrogenase maturation protein [Salmonella typhimurium LT2], gi\|1642138... gi\|205327915, gi... - gi\|205327915\|gb\|EDZ14679.1\| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. e... lcl\|NC_016856.1_... - [gene=hypF] [protein=hydrogenase maturation protein] [protein_id=YP_005238944.1] [location=complemen...	791.0	[0..1]	[746..1]
gi\|62128978, gi\|... - gi\|62181345\|ref\|YP_217762.1\| hydrogenase maturation protein [Salmonella enterica subsp. enterica ser...	783.0	[0..1]	[746..1]
gi\|17130039, gi\|... - gi\|17228189\|ref\|NP_484737.1\| hydrogenase maturation protein [Nostoc sp. PCC 7120], gi\|17130039\|dbj\|B... gi\|25324741 - pir\|\|AD1893 hydrogenase maturation protein [imported] - Nostoc sp. (strain PCC 7120)	780.0	[0..10]	[745..5]
gi\|56383719, gi\|... - gi\|56480168\|ref\|NP_708519.2\| transcriptional regulatory protein [Shigella flexneri 2a str. 301], gi\|... gi\|110616211, gi... - gi\|110806663\|ref\|YP_690183.1\| transcriptional regulatory protein [Shigella flexneri 5 str. 8401], gi... gi\|30064071, gi\|... - gi\|30064071\|ref\|NP_838242.1\| transcriptional regulatory protein [Shigella flexneri 2a str. 2457T], g...	777.0	[0..1]	[743..1]
gi\|83585629 - gi\|83585629\|ref\|ZP_00924272.1\| COG0068: Hydrogenase maturation factor [Escherichia coli 101-1]	776.0	[0..1]	[743..25]
gi\|218696303, gi... - gi\|218696303\|ref\|YP_002403970.1\| carbamoyl phosphate phosphatase and maturation protein for [NiFe] h... gi\|75235695 - gi\|75235695\|ref\|ZP_00719869.1\| COG0068: Hydrogenase maturation factor [Escherichia coli E110019] gi\|75230082 - gi\|75230082\|ref\|ZP_00716592.1\| COG0068: Hydrogenase maturation factor [Escherichia coli B7A]	775.0	[0..1]	[743..1]
gi\|208735203, gi... - gi\|208813926\|ref\|ZP_03255255.1\| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4045], gi... gi\|195938461 - gi\|195938461\|ref\|ZP_03083843.1\| transcriptional regulatory protein [Escherichia coli O157:H7 str. EC... gi\|168749964, gi... - gi\|188015770\|gb\|EDU53892.1\| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|168800208, gi... - gi\|189377506\|gb\|EDU95922.1\| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC508], gi\|1688... gi\|168774757, gi... - gi\|187769621\|gb\|EDU33465.1\| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|254594052, gi... - gi\|254794652\|ref\|YP_003079489.1\| carbamoyl phosphate phosphatase and maturation protein for [NiFe] h... gi\|209761978, gi... - pir\|\|H91074 transcription regulatory protein [imported] - Escherichia coli (strain O157:H7, substrai... gi\|13363039, gi\|... - gi\|15832822\|ref\|NP_311595.1\| transcriptional regulatory protein [Escherichia coli O157:H7 str. Sakai... gi\|13363039, gi\|... - gi\|15832822\|ref\|NP_311595.1\| transcriptional regulatory protein [Escherichia coli O157:H7], gi\|13363...	773.0	[0..1]	[743..1]
gi\|75187431, gi\|... - gi\|75187431\|ref\|ZP_00700698.1\| COG0068: Hydrogenase maturation factor [Escherichia coli E24377A], gi...	773.0	[0..1]	[743..1]
gi\|75256912 - gi\|75256912\|ref\|ZP_00728488.1\| COG0068: Hydrogenase maturation factor [Escherichia coli E22] gi\|218362022, gi... - gi\|218555254\|ref\|YP_002388167.1\| carbamoyl phosphate phosphatase and maturation protein for [NiFe] h...	773.0	[0..1]	[743..1]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIDTPSGVQ LRIRGKVQGV GFRPFVWQLA QQLQLHGDVC NDGDGVVVRL LEDPSQFIAA  60
   61 LYQDCPPLAR IDSVEHASLV WERAPTDFTI RQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	1gxtA
Description:	Hydrogenase maturation protein HypF N-terminal domain (HypF-ACP)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [94-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGGSMNTQIV PDAATCPACL AEMNTPGERR YRYPFINCTH CGPRFTIIRA MPYDRPFTVM  60
   61 AAFPLCPECD SEYRDPYDRR FHAQPVACPS CG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.09
Match:	2i13A
Description:	No description for 2i13A was found.

Predicted Domain #3

Region A:
Residues: [186-388]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHLEWRSQHE RAEKEAALQA AVAQLNAGGI IAVKGLGGFH LACDARNDNA VAMLRARKHR  60
   61 PAKPLAVMLP TAQTLPTAAR SLLTTPAAPI VLVDKQYVPS LSEGIAPGLT EVGVMLPANP 120
  121 LQHLLLQALN YPLVMTSGNL SGKPPAITNE QALDDLHDIA DGFLLHNRDI VQRMDDSVVR 180
  181 DSGEMLRRSR GYVPDAIALP PGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.69897
Match:	1k7jA
Description:	Hypothetical protein YciO
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [389-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDVPPILCLG ADLKNTFCLV RGEQAVVSQH LGDLSDDGIQ AQWREALRLI QSIYDFTPER  60
   61 IVCDAHPG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [457-746]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YVSSQWASEM RLPTETVLHH HAHAAACLAE HGWPLDGGEV IALTVDGIGM GENGALWGGE  60
   61 CLRVNYRECE HLGGLPAVAL PGGDLAAKQP WRNLLAQCLR FVPDWQNYPE TAGLQQQNWS 120
  121 VLARAIERGV NAPLASSCGR LFDAVAAALR CAPASLSYEG EAACALEALA SQCANVEYPV 180
  181 TMPLNGAQLD VAVFWRQWLN WQATPAQRAW AFHDALACGF ATLMRQQATA RGITTLVFSG 240
  241 GVIHNRLLRA RLAFYLSDFK LLFPQRLPAG DGGLSFGQGV IAAARALREV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	2ivnA
Description:	No description for 2ivnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits