YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16761345
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16761345.

Description	E-value	Query Range	Subject Range
gi\|187733229, gi... - gi\|75177820\|ref\|ZP_00697882.1\| COG0385: Predicted Na+-dependent transporter [Shigella boydii BS512],... gi\|82544869, gi\|... - gi\|82544869\|ref\|YP_408816.1\| putative cytochrome oxidase [Shigella boydii Sb227], gi\|81246280\|gb\|ABB...	3.0E-58	[1..332]	[1..332]
gi\|209913150, gi... - gi\|209919891\|ref\|YP_002293975.1\| putative cytochrome oxidase [Escherichia coli SE11], gi\|209913150\|d... gi\|157157547, gi... - gi\|75187163\|ref\|ZP_00700430.1\| COG0385: Predicted Na+-dependent transporter [Escherichia coli E24377... gi\|218352777, gi... - gi\|218696045\|ref\|YP_002403712.1\| putative sodium/bile acid symporter family (mazG-like) [Escherichia...	5.0E-58	[1..332]	[1..332]
gi\|13362752, gi\|... - gi\|15832536\|ref\|NP_311309.1\| putative cytochrome oxidase [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|110642593, gi... - gi\|110642593\|ref\|YP_670323.1\| hypothetical protein ECP_2433 [Escherichia coli 536], gi\|110344185\|gb\|... gi\|189354247, gi... - gi\|189354247\|gb\|EDU72666.1\| transporter, bile acid/Na+ symporter family [Escherichia coli O157:H7 st... gi\|91211746, gi\|... - gi\|91211746\|ref\|YP_541732.1\| putative cytochrome oxidase [Escherichia coli UTI89], gi\|91073320\|gb\|AB... gi\|227887455, gi... - gi\|227887455\|ref\|ZP_04005260.1\| bile acid/Na+ symporter family transporter [Escherichia coli 83972],... gi\|226901298, gi... - gi\|237704932\|ref\|ZP_04535413.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|254593763, gi... - gi\|254794363\|ref\|YP_003079200.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|25497914, gi\|... - pir\|\|D85883 probable cytochrome oxidase yfeH [imported] - Escherichia coli (strain O157:H7, substrai... gi\|218428111, gi... - gi\|218690547\|ref\|YP_002398759.1\| putative sodium/bile acid symporter family (mazG-like) [Escherichia... gi\|218366126, gi... - gi\|218559357\|ref\|YP_002392270.1\| putative sodium/bile acid symporter family (mazG-like) [Escherichia... gi\|13362752, gi\|... - gi\|15832536\|ref\|NP_311309.1\| putative cytochrome oxidase [Escherichia coli O157:H7], gi\|13362752\|dbj... gi\|26248785, gi\|... - gi\|26248785\|ref\|NP_754825.1\| hypothetical protein c2943 [Escherichia coli CFT073], gi\|26109191\|gb\|AA... gi\|117624618, gi... - gi\|117624618\|ref\|YP_853531.1\| putative cytochrome oxidase [Escherichia coli APEC O1], gi\|115513742\|g... gi\|74312945, gi\|... - gi\|74312945\|ref\|YP_311364.1\| putative cytochrome oxidase [Shigella sonnei Ss046], gi\|73856422\|gb\|AAZ... gi\|15802942, gi\|... - gi\|15802942\|ref\|NP_288971.1\| putative cytochrome oxidase [Escherichia coli O157:H7 EDL933], gi\|12516... gi\|191174594, gi... - gi\|75235883\|ref\|ZP_00720028.1\| COG0385: Predicted Na+-dependent transporter [Escherichia coli F11], ... gi\|195938755 - gi\|195938755\|ref\|ZP_03084137.1\| putative cytochrome oxidase [Escherichia coli O157:H7 str. EC4024] gi\|168790575, gi... - gi\|189369989\|gb\|EDU88405.1\| transporter, bile acid/Na+ symporter family [Escherichia coli O157:H7 st... gi\|208818912, gi... - gi\|208818912\|ref\|ZP_03259232.1\| sodium:bile acid symporter family protein [Escherichia coli O157:H7 ... gi\|208813109, gi... - gi\|208813109\|ref\|ZP_03254438.1\| sodium:bile acid symporter family protein [Escherichia coli O157:H7 ... gi\|215265736, gi... - gi\|215487664\|ref\|YP_002330095.1\| predicted inner membrane protein [Escherichia coli O127:H6 str. E23... gi\|209159093, gi... - gi\|209397693\|ref\|YP_002271888.1\| sodium:bile acid symporter family protein [Escherichia coli O157:H7... gi\|218554942, gi... - gi\|218554942\|ref\|YP_002387855.1\| putative sodium/bile acid symporter family (mazG-like) [Escherichia... gi\|217319409, gi... - gi\|217327042\|ref\|ZP_03443125.1\| sodium:bile acid symporter family protein [Escherichia coli O157:H7 ...	5.0E-58	[1..332]	[1..332]
gi\|193066726, gi... - gi\|75255080\|ref\|ZP_00726980.1\| COG0385: Predicted Na+-dependent transporter [Escherichia coli E22], ...	7.0E-58	[1..332]	[1..332]
gi\|194430464, gi... - gi\|75208242\|ref\|ZP_00708605.1\| COG0385: Predicted Na+-dependent transporter [Escherichia coli B171],...	7.0E-58	[1..332]	[1..332]
gi\|30042059, gi\|... - gi\|30063804\|ref\|NP_837975.1\| putative cytochrome oxidase [Shigella flexneri 2a str. 2457T], gi\|30042... gi\|24052833, gi\|... - gi\|24113755\|ref\|NP_708265.1\| putative cytochrome oxidase [Shigella flexneri 2a str. 301], gi\|2405283... gi\|110806350, gi... - gi\|110806350\|ref\|YP_689870.1\| putative cytochrome oxidase [Shigella flexneri 5 str. 8401], gi\|110615...	1.0E-57	[1..332]	[1..332]
gi\|82777803, gi\|... - gi\|82777803\|ref\|YP_404152.1\| putative cytochrome oxidase [Shigella dysenteriae Sd197], gi\|81241951\|g...	1.0E-57	[1..332]	[1..332]
gi\|85675394, gi\|... - gi\|89109223\|ref\|AP_003003.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|188491160, gi... - gi\|75515752\|ref\|ZP_00737887.1\| COG0385: Predicted Na+-dependent transporter [Escherichia coli 53638]... gi\|124532544, gi... - gi\|124532544\|ref\|ZP_01702252.1\| Bile acid:sodium symporter [Escherichia coli B], gi\|124498003\|gb\|EAY... gi\|75196422, gi\|... - gi\|75196422\|ref\|ZP_00706492.1\| COG0385: Predicted Na+-dependent transporter [Escherichia coli HS], g... YFEH_ECOLI - Hypothetical protein yfeH - Escherichia coli gi\|238901572, gi... - gi\|238901572\|ref\|YP_002927368.1\| putative inner membrane protein [Escherichia coli BW2952], gi\|23886... gi\|242378016, gi... - gi\|251785743\|ref\|YP_003000047.1\| hypothetical protein B21_02270 [Escherichia coli BL21], gi\|24237801... gi\|253978460, gi... - gi\|254289153\|ref\|YP_003054901.1\| predicted inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... EG12376 - putative inorganic ion transporter / Predicted inorganic ion transporter; required for swarming phen... gi\|254162392, gi... - gi\|254162392\|ref\|YP_003045500.1\| predicted inner membrane protein [Escherichia coli B str. REL606], ... EG12376 - putative inorganic ion transporter / Predicted inorganic ion transporter; required for swarming phen... gi\|169889853, gi... - gi\|170082018\|ref\|YP_001731338.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|170019308, gi... - gi\|170019308\|ref\|YP_001724262.1\| bile acid:sodium symporter [Escherichia coli ATCC 8739], gi\|1697542...	2.0E-57	[1..332]	[1..332]
gi\|16420964, gi\|... - gi\|16765745\|ref\|NP_461360.1\| putative Na+-dependent transporter [Salmonella typhimurium LT2], gi\|164...	5.0E-57	[1..332]	[1..332]
gi\|224467569, gi... - gi\|224583042\|ref\|YP_002636840.1\| hypothetical protein SPC_1235 [Salmonella enterica subsp. enterica ... gi\|167549565, gi... - gi\|205325191\|gb\|EDZ13030.1\| transporter, bile acid/Na+ symporter family [Salmonella enterica subsp. ... gi\|62128626, gi\|... - gi\|62180993\|ref\|YP_217410.1\| hypothetical protein SC2423 [Salmonella enterica subsp. enterica serova...	5.0E-57	[1..332]	[1..332]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLFRILDPF TLTLITVVLL ASFFPAEGGF VPVVEGITTA AIALLFFMHG AKLSREAIIA  60
   61 GGSHWRLHLW VMCSTFVLFP VLGVLFAWWA PVNVDPMLYS GFLYLCILPA TVQSAIAFTS 120
  121 LAGGNVAAAV CSASASSLLG IFLSPLLVGL VMNIHGAQGS LEEVGKIMLQ LLLPFVLGHL 180
  181 SRPWIGNWVA RNKKWIAKTD QTSILLVVYS AFSEAVV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.102373
Match:	PF01758.7
Description:	No description for PF01758.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [218-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGIWHKVGWG SLLFIVVVSL ILLAIVIAIN VFVARKCGFN KADEITIVFC GSKKSLANGI  60
   61 PMANILFPTS VLGMMVLPLM IFHQIQLMVC AGLARRYKRQ TEKLQAQQES RAAKA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits