YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16765584, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16765584, gi|....

Description	E-value	Query Range	Subject Range
gi\|75196245 - gi\|75196245\|ref\|ZP_00706315.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|75211619 - gi\|75211619\|ref\|ZP_00711698.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|75231459 - gi\|75231459\|ref\|ZP_00717828.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|75259675 - gi\|75259675\|ref\|ZP_00730977.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|81245974, gi\|... - gi\|82544563\|ref\|YP_408510.1\| cytochrome c-type protein [Shigella boydii Sb227], gi\|81245974\|gb\|ABB66... gi\|26248587, gi\|... - gi\|26248587\|ref\|NP_754627.1\| Diheme cytochrome c napB precursor [Escherichia coli CFT073], gi\|261089... gi\|227887260, gi... - gi\|227887260\|ref\|ZP_04005065.1\| periplasmic nitrate reductase electron donor subunit [Escherichia co... gi\|83588187 - gi\|83588187\|ref\|ZP_00926812.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|75176165 - gi\|75176165\|ref\|ZP_00696323.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Shigella boydii... gi\|75186999 - gi\|75186999\|ref\|ZP_00700266.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col...	2.0E-73	[1..149]	[8..156]
gi\|1788531, gi\|4... - gi\|49176197\|ref\|NP_416707.3\| cytochrome c-type protein [Escherichia coli K12], gb\|AAC75263.1\| cytoch... gi\|24113589, gi\|... - ref\|NP_708099.1\| cytochrome c-type protein [Shigella flexneri 2a str. 301], gb\|AAN43806.1\| cytochro... gi\|15802756, gi\|... - gi\|15802756\|ref\|NP_288783.1\| cytochrome c-type protein [Escherichia coli O157:H7 EDL933], gi\|1251653... gi\|117624397, gi... - gi\|117624397\|ref\|YP_853310.1\| diheme cytochrome c550 [Escherichia coli APEC O1], gi\|115513521\|gb\|ABJ... gi\|91073067, gi\|... - gi\|91211493\|ref\|YP_541479.1\| cytochrome c-type protein [Escherichia coli UTI89], gi\|91073067\|gb\|ABE0... gi\|13362561 - gi\|13362561\|dbj\|BAB36515.1\| cytochrome c-type protein [Escherichia coli O157:H7 str. Sakai] gi\|75514433 - gi\|75514433\|ref\|ZP_00736711.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|74312724, gi\|... - gi\|74312724\|ref\|YP_311143.1\| cytochrome c-type protein [Shigella sonnei Ss046], gi\|73856201\|gb\|AAZ88... gi\|75237997 - gi\|75237997\|ref\|ZP_00722002.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|75243019 - gi\|75243019\|ref\|ZP_00726725.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Escherichia col... gi\|13362561 - gi\|13362561\|dbj\|BAB36515.1\| cytochrome c-type protein [Escherichia coli O157:H7] gi\|226901042, gi... - gi\|237704676\|ref\|ZP_04535157.1\| nitrate reductase [Escherichia sp. 3_2_53FAA], gi\|226901042\|gb\|EEH87... gi\|209765752, gi... - pir\|\|A64990 diheme cytochrome napB precursor - Escherichia coli (strain K-12), pir\|\|F85859 cytochrom...	4.0E-73	[1..149]	[8..156]
gi\|82776194, gi\|... - gi\|82776194\|ref\|YP_402543.1\| cytochrome c-type protein [Shigella dysenteriae Sd197], gi\|81240342\|gb\|...	1.0E-72	[1..149]	[8..156]
gi\|188494955, gi... - gi\|188494955\|ref\|ZP_03002225.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escheric... EG12061 - nitrate reductase, small, cytochrome C550 subunit, periplasmic / Nitrate reductase, periplasmic gi\|191169948, gi... - gi\|191169948\|ref\|ZP_03031502.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escheric... gi\|193068256, gi... - gi\|193068256\|ref\|ZP_03049220.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escheric... gi\|254794102, gi... - gi\|254794102\|ref\|YP_003078939.1\| nitrate reductase, small, cytochrome C550 subunit, periplasmic [Esc... gi\|195935583 - gi\|195935583\|ref\|ZP_03080965.1\| diheme cytochrome c550 [Escherichia coli O157:H7 str. EC4024] gi\|168787112, gi... - gi\|189372856\|gb\|EDU91272.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escherichia ... gi\|168802418, gi... - gi\|189375604\|gb\|EDU94020.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escherichia ... gi\|170019483, gi... - gi\|170019483\|ref\|YP_001724437.1\| citrate reductase cytochrome c-type subunit [Escherichia coli ATCC ... gi\|170081823, gi... - gi\|170081823\|ref\|YP_001731143.1\| nitrate reductase, small, cytochrome C550 subunit, periplasmic [Esc... gi\|168764698, gi... - gi\|189365345\|gb\|EDU83761.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escherichia ... gi\|168767826, gi... - gi\|189362894\|gb\|EDU81313.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escherichia ... gi\|187771299, gi... - gi\|187771299\|gb\|EDU35143.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escherichia ... gi\|189002146, gi... - gi\|189002146\|gb\|EDU71132.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escherichia ... NAPB_ECOLI - Diheme cytochrome c napB precursor - Escherichia coli gi\|161986501 - gi\|161986501\|ref\|YP_311143.2\| diheme cytochrome c550 [Shigella sonnei Ss046] gi\|162138405 - gi\|162138405\|ref\|YP_541479.2\| diheme cytochrome c550 [Escherichia coli UTI89] gi\|188016097, gi... - gi\|188016097\|gb\|EDU54219.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escherichia ... gi\|168754953, gi... - gi\|189357758\|gb\|EDU76177.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escherichia ... gi\|38704063 - gi\|38704063\|ref\|NP_311119.2\| citrate reductase cytochrome c-type subunit [Escherichia coli O157:H7 s... gi\|110344003, gi... - gi\|110642411\|ref\|YP_670141.1\| citrate reductase cytochrome c-type subunit [Escherichia coli 536], gi... gi\|110615727, gi... - gi\|110806179\|ref\|YP_689699.1\| diheme cytochrome c550 [Shigella flexneri 5 str. 8401], gi\|110615727\|g... gi\|218700672, gi... - gi\|218700672\|ref\|YP_002408301.1\| citrate reductase cytochrome c-type subunit [Escherichia coli IAI39... gi\|218432829, gi... - gi\|218705732\|ref\|YP_002413251.1\| citrate reductase cytochrome c-type subunit [Escherichia coli UMN02... gi\|124526372, gi... - gi\|124526372\|ref\|ZP_01698325.1\| Nitrate reductase cytochrome c-type subunit (NapB) [Escherichia coli... gi\|215265493, gi... - gi\|215487421\|ref\|YP_002329852.1\| citrate reductase cytochrome c-type subunit [Escherichia coli O127:... gi\|217319175, gi... - gi\|217326808\|ref\|ZP_03442891.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escheric... gi\|38704063 - gi\|38704063\|ref\|NP_311119.2\| cytochrome c-type protein [Escherichia coli O157:H7] gi\|218365889, gi... - gi\|218559120\|ref\|YP_002392033.1\| citrate reductase cytochrome c-type subunit [Escherichia coli S88],... gi\|218427929, gi... - gi\|218690365\|ref\|YP_002398577.1\| citrate reductase cytochrome c-type subunit [Escherichia coli ED1a]... gi\|208807888, gi... - gi\|208807888\|ref\|ZP_03250225.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escheric... gi\|208814227, gi... - gi\|208814227\|ref\|ZP_03255556.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escheric... gi\|208739694, gi... - gi\|208819571\|ref\|ZP_03259891.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escheric... gi\|209400531, gi... - gi\|209400531\|ref\|YP_002271615.1\| periplasmic nitrate reductase, diheme cytochrome c subunit [Escheri... NAPB_SHIFL - Periplasmic nitrate reductase, electron transfer subunit OS=Shigella flexneri GN=napB PE=3 SV=1 gi\|30041896, gi\|... - gi\|30063643\|ref\|NP_837814.1\| diheme cytochrome c550 [Shigella flexneri 2a str. 2457T], gi\|30041896\|g... gi\|161367570 - gi\|161367570\|ref\|NP_288783.2\| diheme cytochrome c550 [Escherichia coli O157:H7 EDL933] gi\|89109019, gi\|... - gi\|89109019\|ref\|AP_002799.1\| nitrate reductase, small, cytochrome C550 subunit, periplasmic [Escheri... gi\|56480065, gi\|... - gi\|56480065\|ref\|NP_708099.2\| diheme cytochrome c550 [Shigella flexneri 2a str. 301], gi\|56383616\|gb\|... EG12061 - nitrate reductase, small, cytochrome C550 subunit, periplasmic / Nitrate reductase, periplasmic gi\|238861907, gi... - gi\|238901377\|ref\|YP_002927173.1\| nitrate reductase, small, cytochrome C550 subunit, periplasmic [Esc...	3.0E-72	[1..149]	[1..149]
gi\|405928 - gi\|405928\|gb\|AAA16395.1\| yejY [Escherichia coli]	2.0E-60	[1..127]	[8..134]
gi\|25321692 - pir\|\|AD0369 cytochrome C-type protein NapB precursor [imported] - Yersinia pestis (strain CO92) gi\|153949006, gi... - gi\|153949006\|ref\|YP_001400254.1\| citrate reductase cytochrome c-type subunit [Yersinia pseudotubercu... gi\|149365102, gi... - gi\|149365102\|ref\|ZP_01887137.1\| cytochrome C-type protein NapB precursor [Yersinia pestis CA88-4125]... gi\|115348693, gi... - gi\|16123214\|ref\|NP_406527.1\| cytochrome C-type protein NapB precursor [Yersinia pestis CO92], gi\|159... gi\|22125343, gi\|... - gi\|22125343\|ref\|NP_668766.1\| cytochrome c-type protein [Yersinia pestis KIM], gi\|21958223\|gb\|AAM8501... gi\|167467007 - gi\|167467007\|ref\|ZP_02331711.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer... gi\|167398640, gi... - gi\|167398640\|ref\|ZP_02304164.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer...	6.0E-58	[7..149]	[6..151]
gi\|77960882 - gi\|77960882\|ref\|ZP_00824736.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia mollar...	7.0E-58	[6..149]	[9..155]
gi\|166212514, gi... - gi\|166212514\|ref\|ZP_02238549.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer... gi\|229895698, gi... - gi\|229895698\|ref\|ZP_04510869.1\| cytochrome C-type protein NapB precursor [Yersinia pestis Pestoides ... gi\|166011142, gi... - gi\|166011142\|ref\|ZP_02232040.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer... gi\|229899198, gi... - gi\|229899198\|ref\|ZP_04514341.1\| cytochrome C-type protein NapB precursor [Yersinia pestis biovar Ori... gi\|167424559, gi... - gi\|167424559\|ref\|ZP_02316312.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer... gi\|166958400, gi... - gi\|167422693\|ref\|ZP_02314446.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer... gi\|229694998, gi... - gi\|229838632\|ref\|ZP_04458791.1\| cytochrome C-type protein NapB precursor [Yersinia pestis biovar Ori... gi\|162418833, gi... - gi\|162418833\|ref\|YP_001607179.1\| diheme cytochrome c550 [Yersinia pestis Angola], gi\|162351648\|gb\|AB... gi\|145599416, gi... - gi\|145599416\|ref\|YP_001163492.1\| diheme cytochrome c550 [Yersinia pestis Pestoides F], gi\|145211112\|... gi\|161511348 - gi\|161511348\|ref\|NP_993975.2\| diheme cytochrome c550 [Yersinia pestis biovar Microtus str. 91001] gi\|165916229, gi... - gi\|165936084\|ref\|ZP_02224654.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer... gi\|165921264, gi... - gi\|165926913\|ref\|ZP_02222745.1\| periplasmic nitrate reductase, diheme cytochrome c subunit NapB [Yer... gi\|229681705, gi... - gi\|229901776\|ref\|ZP_04516898.1\| cytochrome C-type protein NapB precursor [Yersinia pestis Nepal516],... gi\|108808222, gi... - gi\|108808222\|ref\|YP_652138.1\| diheme cytochrome c550 [Yersinia pestis Antiqua], gi\|108780135\|gb\|ABG1... gi\|161484836 - gi\|161484836\|ref\|NP_668766.2\| diheme cytochrome c550 [Yersinia pestis KIM] Q668I1\|Q668I1_YERPS - Cytochrome C-type protein NapB precursor - Yersinia pseudotuberculosis gi\|51597075, gi\|... - gi\|51597075\|ref\|YP_071266.1\| diheme cytochrome c550 [Yersinia pseudotuberculosis IP 32953], gi\|51590... gi\|218930082 - gi\|218930082\|ref\|YP_002347957.1\| citrate reductase cytochrome c-type subunit [Yersinia pestis CO92] gi\|169750164, gi... - gi\|170023630\|ref\|YP_001720135.1\| citrate reductase cytochrome c-type subunit [Yersinia pseudotubercu...	9.0E-58	[7..149]	[10..155]
gi\|77977005 - gi\|77977005\|ref\|ZP_00832467.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia interm...	5.0E-57	[6..149]	[9..155]
gi\|238723681, gi... - gi\|77974598\|ref\|ZP_00830137.1\| COG3043: Nitrate reductase cytochrome c-type subunit [Yersinia freder...	1.0E-55	[6..149]	[9..155]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSHDLMKAL CQWMATLALV VSGAVWAANG VDLSQSPEVS GTQEGAIRMP KEQERMPLNY  60
   61 VNQPPMIPHS VEGYQVTTNT NRCLQCHGVE SYRTTGAPRI SPTHFMDSDG KVSGNVAPRR 120
  121 YFCLQCHVPQ SDTAPIIDNT FTPSQGYGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.39794
Match:	1jniA
Description:	Periplasmic nitrate reductase subunit NapB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on other nitrogenous compounds as donors	12.7591230788202	bayes_pls_golite062009
nitrate reductase activity	11.6275376808252	bayes_pls_golite062009
catalytic activity	0.202301774983557	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: