YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29136791, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	489 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29136791, gi|....

Description	E-value	Query Range	Subject Range
gi\|42548077, gi\|... - gi\|46115934\|ref\|XP_383985.1\| hypothetical protein FG03809.1 [Gibberella zeae PH-1], gi\|42548077\|gb\|E...	3.0E-84	[1..488]	[1089..1557]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	1.0E-82	[11..489]	[39..526]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	2.0E-78	[2..488]	[67..560]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	5.0E-78	[9..487]	[138..627]
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	2.0E-77	[3..487]	[134..630]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	5.0E-77	[13..488]	[145..629]
AGP1_SACBA - General amino acid permease AGP1 OS=Saccharomyces bayanus GN=AGP1 PE=3 SV=1 AGP1_SACU7 - General amino acid permease AGP1 OS=Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / ...	3.0E-76	[4..487]	[107..600]
gi\|66846710, gi\|... - gi\|70987201\|ref\|XP_749080.1\| amino acid permease (Gap1) [Aspergillus fumigatus Af293], gi\|66846710\|g...	4.0E-76	[2..489]	[62..555]

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Predicted Domain #1

Region A:
Residues: [1-489]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKTKTTEA PALRRELKAR HLTMIAIGGS IGTGLFVASG ATISLAGPGG ALFSYILIGL  60
   61 MVYFLMTSLG ELAAYMPVSG SFATYGQNYV EEGFGFALGW NYWYNWAVTI AVDLVAAQLV 120
  121 MGWWFPDTPG WIWSALFLCV IFLLNYISVR GFGEAEYWFS LIKVATVIIF IIVGVAMIIG 180
  181 IFKGVEPVGW SNWTTGDAPF AGGFAAMIGV AMIVGFSFQG TELIGIAAGE SENPEKNIPR 240
  241 AVRQVFWRIL LFYVFAILII SLIIPYTDPN LLRNDVKDIS VSPFTLVFQH AGLLSAAAIM 300
  301 NAVILTAVLS AGNSGMYAST RMLYTLACDG KAPRIFAKLS RGGVPRNALY ATTVIAGLCF 360
  361 LTSMFGNQTV YLWLLNTSGM TGFIAWLGIA ISHYRFRRGY VLQGYDVNDL PYRSGFFPLG 420
  421 PIFAFVLCLI ITLGQNYEAF LKDTIDWGGV AATYIGIPLF LLIWFGYKLI KGTHFVRYSE 480
  481 MHFPERVKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.62
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits