YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29136792, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	663 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29136792, gi|....

Description	E-value	Query Range	Subject Range
gi\|224583304, gi... - gi\|224583304\|ref\|YP_002637102.1\| colicin I receptor precursor [Salmonella enterica subsp. enterica s... gi\|197093296, gi... - gi\|197361820\|ref\|YP_002141456.1\| colicin I receptor [Salmonella enterica subsp. enterica serovar Par... gi\|62128418, gi\|... - gi\|62180785\|ref\|YP_217202.1\| colicin I receptor [Salmonella enterica subsp. enterica serovar Cholera... gi\|56412889, gi\|... - gi\|56412889\|ref\|YP_149964.1\| colicin I receptor [Salmonella enterica subsp. enterica serovar Paratyp...	0.0	[1..663]	[1..663]
lcl\|NC_016856.1_... - [gene=cirA] [protein=colicin I receptor] [protein_id=YP_005238252.1] [location=complement(2348105..2... gi\|16765529, gi\|... - gi\|16765529\|ref\|NP_461144.1\| colicin I receptor [Salmonella typhimurium LT2], gi\|16420737\|gb\|AAL2110...	0.0	[1..663]	[1..663]
gi\|110642365, gi... - gi\|110642365\|ref\|YP_670095.1\| colicin I receptor [Escherichia coli 536], gi\|110343957\|gb\|ABG70194.1\|...	0.0	[1..663]	[1..663]
gi\|85675269, gi\|... - gi\|89108972\|ref\|AP_002752.1\| ferric iron-catecholate outer membrane transporter [Escherichia coli st... EG10155 - colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter / Colicin I... gi\|238901337, gi... - gi\|238901337\|ref\|YP_002927133.1\| ferric iron-catecholate outer membrane transporter [Escherichia col... gi\|170019528, gi... - gi\|170019528\|ref\|YP_001724482.1\| colicin I receptor [Escherichia coli ATCC 8739], gi\|169754456\|gb\|AC... gi\|169889612, gi... - gi\|170081777\|ref\|YP_001731097.1\| ferric iron-catecholate outer membrane transporter [Escherichia col... gi\|209912872, gi... - gi\|209919613\|ref\|YP_002293697.1\| colicin I receptor [Escherichia coli SE11], gi\|209912872\|dbj\|BAG779... EG10155 - colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter / Colicin I... gi\|218352500, gi... - gi\|218695768\|ref\|YP_002403435.1\| colicin I receptor [Escherichia coli 55989], gi\|218352500\|emb\|CAU98... gi\|124501787, gi... - gi\|124526731\|ref\|ZP_01698640.1\| TonB-dependent receptor, plug [Escherichia coli B], gi\|124501787\|gb\|... CIRA_ECOLI - Colicin I receptor precursor - Escherichia coli gi\|157161635, gi... - gi\|157161635\|ref\|YP_001458953.1\| colicin I receptor [Escherichia coli HS], gi\|157067315\|gb\|ABV06570....	0.0	[1..663]	[1..663]
gi\|26108943, gi\|... - gi\|26248538\|ref\|NP_754578.1\| colicin I receptor [Escherichia coli CFT073], gi\|26108943\|gb\|AAN81146.1... gi\|91211442, gi\|... - gi\|91211442\|ref\|YP_541428.1\| colicin I receptor [Escherichia coli UTI89], gi\|91073016\|gb\|ABE07897.1\|... gi\|115513480, gi... - gi\|117624356\|ref\|YP_853269.1\| colicin I receptor [Escherichia coli APEC O1], gi\|115513480\|gb\|ABJ0155... gi\|237704622, gi... - gi\|237704622\|ref\|ZP_04535103.1\| ferric iron-catecholate outer membrane transporter [Escherichia sp. ...	0.0	[1..663]	[28..690]
gi\|73856154, gi\|... - gi\|74312677\|ref\|YP_311096.1\| colicin I receptor [Shigella sonnei Ss046], gi\|73856154\|gb\|AAZ88861.1\| ...	0.0	[1..663]	[1..663]
gi\|145544 - gi\|145544\|gb\|AAA75183.1\| colicin I receptor [Escherichia coli]	0.0	[1..663]	[1..663]
gi\|110806131, gi... - gi\|110806131\|ref\|YP_689651.1\| colicin I receptor [Shigella flexneri 5 str. 8401], gi\|110615679\|gb\|AB...	0.0	[1..663]	[1..663]
gi\|15832301, gi\|... - gi\|15832301\|ref\|NP_311074.1\| colicin I receptor precursor [Escherichia coli O157:H7], gi\|13362516\|db... gi\|208735644, gi... - gi\|208814367\|ref\|ZP_03255696.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4045], gi\|208735... gi\|208726662, gi... - gi\|208806861\|ref\|ZP_03249198.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4206], gi\|208726... gi\|254794054, gi... - gi\|254794054\|ref\|YP_003078891.1\| outer membrane transporter for monomeric catechol-containing ferric... gi\|195935534 - gi\|195935534\|ref\|ZP_03080916.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4024] gi\|25300743, gi\|... - pir\|\|G91009 colicin I receptor precursor [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|168788968, gi... - gi\|189371405\|gb\|EDU89821.1\| colicin I receptor [Escherichia coli O157:H7 str. EC869], gi\|168788968\|r... gi\|209157860, gi... - gi\|209396460\|ref\|YP_002271566.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4115], gi\|20915... gi\|208739588, gi... - gi\|208819465\|ref\|ZP_03259785.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4042], gi\|208739... gi\|168780002, gi... - gi\|189001955\|gb\|EDU70941.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4076], gi\|168780002\|... gi\|168773130, gi... - gi\|187771049\|gb\|EDU34893.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4196], gi\|168773130\|... gi\|189362983, gi... - gi\|189362983\|gb\|EDU81402.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4486], gi\|168767772\|... gi\|168750539, gi... - gi\|188015327\|gb\|EDU53449.1\| colicin I receptor [Escherichia coli O157:H7 str. EC4113], gi\|168750539\|... gi\|15832301, gi\|... - gi\|15832301\|ref\|NP_311074.1\| colicin I receptor [Escherichia coli O157:H7 str. Sakai], gi\|13362516\|d...	0.0	[1..663]	[1..659]
gi\|15802711, gi\|... - gi\|15802711\|ref\|NP_288738.1\| colicin I receptor [Escherichia coli O157:H7 EDL933], gi\|12516475\|gb\|AA... gi\|25300744 - pir\|\|A85854 hypothetical protein cirA [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	0.0	[1..663]	[1..659]

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Predicted Domain #1

Region A:
Residues: [1-663]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRFNPFVRV GLCMSAVTLA WPVAAATDDG ETMVVTASAI EQNLKDAPAS ISVITQQDLQ  60
   61 RRPVQNLKDV LKEVPGVQLT NEGDNRKGVS IRGLDSSYTL ILIDGKRVNS RNAVFRHNDF 120
  121 DLNWIPVDAI ERIEVVRGPM SSLYGSDALG GVVNIITKKI GQKWHGSVTV DSTIQEHRDR 180
  181 GDTYNGQFFT SGPLIDGVLG MKAYGSLAKR EKDEQQSSAT TATGETPRIE GFTSRDGNVE 240
  241 FAWTPNENHD VTAGYGFDRQ DRDSDSLDKN RLERQNYALS HNGRWDLGNS ELKFYGEKVE 300
  301 NKNPGNSSPI TSESNSIDGK YVLPLASVNQ FLTFGGEWRH DKLSDAVSLT GGSSTKTSAS 360
  361 QYALFLEDEW RIFEPLALTT GIRMDDHETY GDHWSPRAYL VYNATDTLTV KGGWATAFKA 420
  421 PSLLQLSPDW ATNSCRGGCR IVGSPDLKPE TSESWELGLY YRGEEGILEG VEASVTTFRN 480
  481 DVDNRISISR TPDVNAAPGY SNFVGFETNS RGQRVPVFRY YNVNKARIQG VETELKVPFN 540
  541 EAWKLSLNYT YNDGRDVSNG GNKPLSDLPF HTANGTLDWK PAQLEDWSFY VSGNYTGRKR 600
  601 ADSATAKTPG GYVVWDTGAA WQATKNVKLR AGVLNVGDKD LKRDDYGYTE DGRRYFMAVD 660
  661 YRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.0
Match:	2hdfA
Description:	No description for 2hdfA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits