YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29136903, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29136903, gi|....

Description	E-value	Query Range	Subject Range
gi\|197361929, gi... - gi\|197361929\|ref\|YP_002141566.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica ... gi\|56127258, gi\|... - gi\|56413001\|ref\|YP_150076.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica sero...	1.0E-84	[1..292]	[1..292]
RMLA1_SHIFL - Glucose-1-phosphate thymidylyltransferase 1 OS=Shigella flexneri GN=rfbA PE=3 SV=2 gi\|24113424, gi\|... - gi\|24113424\|ref\|NP_707934.1\| glucose-1-phosphate thymidylyltransferase [Shigella flexneri 2a str. 30... gi\|30063490, gi\|... - gi\|30063490\|ref\|NP_837661.1\| glucose-1-phosphate thymidylyltransferase [Shigella flexneri 2a str. 24...	1.0E-84	[1..290]	[1..290]
gi\|46451853 - gi\|46451853\|gb\|AAS98028.1\| RmlA [Shigella boydii]	1.0E-84	[1..290]	[1..290]
gi\|83746221, gi\|... - gi\|83746221\|ref\|ZP_00943275.1\| Glucose-1-phosphate thymidylyltransferase [Ralstonia solanacearum UW5...	2.0E-84	[4..291]	[71..358]
gi\|73809591 - gi\|73809591\|gb\|AAZ85716.1\| glucose-1-phosphate thymidylyltransferase [Escherichia coli]	2.0E-84	[1..290]	[1..290]
gi\|157157449, gi... - gi\|75186837\|ref\|ZP_00700104.1\| COG1209: dTDP-glucose pyrophosphorylase [Escherichia coli E24377A], g...	2.0E-84	[1..290]	[1..290]
gi\|47891 - gi\|47891\|emb\|CAA40117.1\| glucose-1-phosphate thymidylyltransferase [Salmonella enterica] RMLA_SALTY - Glucose-1-phosphate thymidylyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70... lcl\|NC_016856.1_... - [gene=rfbA] [protein=dTDP-glucose pyrophosphorylase] [protein_id=YP_005238130.1] [location=complemen... RMLA_SALTY - Glucose-1-phosphate thymidylyltransferase OS=Salmonella typhimurium GN=rmlA PE=1 SV=1 RMLA_SALTY - Glucose-1-phosphate thymidylyltransferase OS=Salmonella typhimurium GN=rmlA PE=1 SV=1	3.0E-84	[1..292]	[1..292]
gi\|46985 - gi\|46985\|emb\|CAA43074.1\| glucose-1-phosphate thymidylyltransferase [Salmonella enterica] gi\|96668 - pir\|\|S23342 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) [validated] - Salmonella cholera... RMLA_SALAN - Glucose-1-phosphate thymidylyltransferase OS=Salmonella anatum GN=rmlA PE=3 SV=1	3.0E-84	[1..290]	[1..290]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTRKGIILA GGSGTRLYPV TMAVSKQLLP IYDKPMIYYP LSTLMLAGIR DILIISTPQD  60
   61 TPRFQQLLGD GSQWGLNLQY KVQPSPDGLA QAFIIGEEFI GNNDCALVLG DNIFYGHDLP 120
  121 KLMEAAVNKE SGATVFAYHV NDPERYGVVE FDQNGTAVSL EEKPLQPKSN YAVTGLYFYD 180
  181 NSVVEMAKNL KPSSRGELEI TDINRIYMDQ GRLSVAMMGR GYAWLDTGTH QSLIEASNFI 240
  241 ATIEERQGLK VSCPEEIAFR KNFINAQQVI KLAGPLSKND YGKYLLKMVK GL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.39794
Match:	1mp3A
Description:	RmlA (RfbA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
uridylyltransferase activity	3.74072767898515	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.70047942699289	bayes_pls_golite062009
UTP:glucose-1-phosphate uridylyltransferase activity	2.65167602524122	bayes_pls_golite062009
UTP-monosaccharide-1-phosphate uridylyltransferase activity	2.46432078102948	bayes_pls_golite062009
UDP-glycosyltransferase activity	2.33861720107822	bayes_pls_golite062009
transferase activity	2.17535315350752	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	1.33788133706753	bayes_pls_golite062009
nucleotidyltransferase activity	1.17054423506287	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	1.10309252319727	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.02084820914491	bayes_pls_golite062009
cytidylyltransferase activity	0.983416157001861	bayes_pls_golite062009
mannosyltransferase activity	0.91123217364068	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.897978517422275	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.513376694534047	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.2363835251362	bayes_pls_golite062009
guanylyltransferase activity	0.0539392112504681	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: