YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16760883
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16760883.

Description	E-value	Query Range	Subject Range
gi\|157079790, gi... - gi\|75190931\|ref\|ZP_00704198.1\| hypothetical protein EcolE_01004244 [Escherichia coli E24377A], gi\|15... gi\|157067060, gi... - gi\|75195969\|ref\|ZP_00706039.1\| hypothetical protein EcolH_01001773 [Escherichia coli HS], gi\|1571613... gi\|187733175, gi... - gi\|75175586\|ref\|ZP_00695798.1\| hypothetical protein SboyB_01004399 [Shigella boydii BS512], gi\|18773... gi\|81245034, gi\|... - gi\|82543623\|ref\|YP_407570.1\| hypothetical protein SBO_1100 [Shigella boydii Sb227], gi\|81245034\|gb\|A... gi\|191169681, gi... - gi\|75226793\|ref\|ZP_00713726.1\| hypothetical protein EcolB7_01004648 [Escherichia coli B7A], gi\|19116... gi\|169889392, gi... - gi\|170081557\|ref\|YP_001730877.1\| hypothetical protein ECDH10B_2047 [Escherichia coli str. K-12 subst... gi\|74311745, gi\|... - gi\|74311745\|ref\|YP_310164.1\| hypothetical protein SSON_1212 [Shigella sonnei Ss046], gi\|73855222\|gb\|... gi\|238901118, gi... - gi\|238901118\|ref\|YP_002926914.1\| hypothetical protein BWG_1718 [Escherichia coli BW2952], gi\|2388628... gi\|253773139, gi... - gi\|253773139\|ref\|YP_003035970.1\| hypothetical protein ECBD_1734 [Escherichia coli BL21(DE3)], gi\|253... EG12863 - DUF2492 family protein / DUF2492 family protein, function unknown EG12863 - DUF2492 family protein / DUF2492 family protein, function unknown gi\|218361260, gi... - gi\|218554492\|ref\|YP_002387405.1\| hypothetical protein ECIAI1_1991 [Escherichia coli IAI1], gi\|218361... YECH_ECOLI - Hypothetical protein yecH - Escherichia coli gi\|209919330, gi... - gi\|209919330\|ref\|YP_002293414.1\| hypothetical protein ECSE_2139 [Escherichia coli SE11], gi\|20991258... gi\|89108744, gi\|... - gi\|89108744\|ref\|AP_002524.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|173...	128.0	[0..1]	[79..1]
gi\|218432501, gi... - gi\|218705404\|ref\|YP_002412923.1\| hypothetical protein ECUMN_2201 [Escherichia coli UMN026], gi\|21843... gi\|194434100, gi... - gi\|194434100\|ref\|ZP_03066369.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|170521751, gi... - gi\|170684033\|ref\|YP_001743335.1\| hypothetical protein EcSMS35_1277 [Escherichia coli SMS-3-5], gi\|17... gi\|83585497, gi\|... - gi\|83585497\|ref\|ZP_00924141.1\| hypothetical protein Ecol1_01003227 [Escherichia coli 101-1], gi\|1944...	128.0	[0..1]	[79..1]
gi\|82776411, gi\|... - gi\|82776411\|ref\|YP_402760.1\| hypothetical protein SDY_1112 [Shigella dysenteriae Sd197], gi\|81240559...	127.0	[0..1]	[79..1]
gi\|124498049, gi... - gi\|124532341\|ref\|ZP_01702206.1\| conserved hypothetical protein [Escherichia coli B], gi\|124498049\|gb... gi\|237705864, gi... - gi\|237705864\|ref\|ZP_04536345.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|251785351, gi... - gi\|251785351\|ref\|YP_002999655.1\| hypothetical protein B21_01863 [Escherichia coli BL21], gi\|24237762... gi\|253973864, gi... - gi\|254161963\|ref\|YP_003045071.1\| hypothetical protein ECB_01874 [Escherichia coli B str. REL606], gi... gi\|254288751, gi... - gi\|254288751\|ref\|YP_003054499.1\| hypothetical protein ECD_01874 [Escherichia coli BL21(DE3)], gi\|253... gi\|254592929, gi... - gi\|254793529\|ref\|YP_003078366.1\| hypothetical protein ECSP_2479 [Escherichia coli O157:H7 str. TW143... gi\|168802218, gi... - gi\|189375752\|gb\|EDU94168.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168789774, gi... - gi\|189370700\|gb\|EDU89116.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|195939945 - gi\|195939945\|ref\|ZP_03085327.1\| hypothetical protein EscherichcoliO157_26698 [Escherichia coli O157:... gi\|169754681, gi... - gi\|170019753\|ref\|YP_001724707.1\| hypothetical protein EcolC_1730 [Escherichia coli ATCC 8739], gi\|16... gi\|208817009, gi... - gi\|208817009\|ref\|ZP_03258129.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208725230, gi... - gi\|208810714\|ref\|ZP_03252590.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|209397342, gi... - gi\|209397342\|ref\|YP_002270990.1\| hypothetical protein ECH74115_2645 [Escherichia coli O157:H7 str. E... gi\|208738937, gi... - gi\|208818814\|ref\|ZP_03259134.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|168757944, gi... - gi\|189355204\|gb\|EDU73623.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168747936, gi... - gi\|188017415\|gb\|EDU55537.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189359472, gi... - gi\|189359472\|gb\|EDU77891.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189367403, gi... - gi\|189367403\|gb\|EDU85819.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|188999423, gi... - gi\|188999423\|gb\|EDU68409.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|187768062, gi... - gi\|187768062\|gb\|EDU31906.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|192956759, gi... - gi\|75235293\|ref\|ZP_00719519.1\| hypothetical protein EcolE1_01002845 [Escherichia coli E110019], gi\|1... gi\|194430426, gi... - gi\|75208288\|ref\|ZP_00708641.1\| hypothetical protein EcolB_01004454 [Escherichia coli B171], gi\|19443... gi\|209767106, gi... - pir\|\|C85804 hypothetical protein yecH [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|110642021, gi... - gi\|110642021\|ref\|YP_669751.1\| hypothetical protein ECP_1849 [Escherichia coli 536], gi\|110343613\|gb\|... gi\|218365536, gi... - gi\|218558767\|ref\|YP_002391680.1\| hypothetical protein ECS88_1962 [Escherichia coli S88], gi\|21836553... gi\|217328623, gi... - gi\|217328623\|ref\|ZP_03444704.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|12515972, gi\|... - gi\|15802315\|ref\|NP_288341.1\| hypothetical protein Z2962 [Escherichia coli O157:H7 EDL933], gi\|125159... gi\|218352202, gi... - gi\|218695470\|ref\|YP_002403137.1\| hypothetical protein EC55989_2083 [Escherichia coli 55989], gi\|2183... gi\|15831868, gi\|... - gi\|15831868\|ref\|NP_310641.1\| hypothetical protein ECs2614 [Escherichia coli O157:H7], gi\|13362082\|db... gi\|218689902, gi... - gi\|218689902\|ref\|YP_002398114.1\| hypothetical protein ECED1_2174 [Escherichia coli ED1a], gi\|2184274... gi\|75513050, gi\|... - gi\|75513050\|ref\|ZP_00735512.1\| hypothetical protein Ecol5_01002784 [Escherichia coli 53638], gi\|1884... gi\|75256513, gi\|... - gi\|75256513\|ref\|ZP_00728159.1\| hypothetical protein EcolE2_01003608 [Escherichia coli E22], gi\|19306... gi\|91072702, gi\|... - gi\|91211128\|ref\|YP_541114.1\| hypothetical protein UTI89_C2107 [Escherichia coli UTI89], gi\|91072702\|... gi\|190906710, gi... - gi\|75239678\|ref\|ZP_00723641.1\| hypothetical protein EcolF_01002875 [Escherichia coli F11], gi\|191172... gi\|15831868, gi\|... - gi\|15831868\|ref\|NP_310641.1\| hypothetical protein ECs2614 [Escherichia coli O157:H7 str. Sakai], gi\|...	126.0	[0..1]	[79..1]
gi\|24113286, gi\|... - gi\|24113286\|ref\|NP_707796.1\| hypothetical protein SF1952 [Shigella flexneri 2a str. 301], gi\|2405229... gi\|30063353, gi\|... - gi\|30063353\|ref\|NP_837524.1\| hypothetical protein S2045 [Shigella flexneri 2a str. 2457T], gi\|300416... gi\|110615430, gi... - gi\|110805882\|ref\|YP_689402.1\| hypothetical protein SFV_1950 [Shigella flexneri 5 str. 8401], gi\|1106...	126.0	[0..1]	[79..1]
gi\|227837238, gi... - gi\|227885665\|ref\|ZP_04003470.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783723... gi\|26248174, gi\|... - gi\|26248174\|ref\|NP_754214.1\| hypothetical protein c2322 [Escherichia coli CFT073], gi\|26108578\|gb\|AA...	124.0	[0..1]	[79..1]
gi\|58375040, gi\|... - gi\|58375040\|ref\|XP_306557.2\| ENSANGP00000001001 [Anopheles gambiae str. PEST], gi\|55247206\|gb\|EAA022...	112.0	[0..3]	[79..2]
gi\|46911790, gi\|... - gi\|54307370\|ref\|YP_128390.1\| hypothetical protein PBPRA0149 [Photobacterium profundum SS9], gi\|46911...	108.0	[0..3]	[79..4]
gi\|1015399 - gi\|1015399\|gb\|AAA79048.1\| YecH	107.0	[0..13]	[79..1]
gi\|90326306, gi\|... - gi\|90412731\|ref\|ZP_01220732.1\| hypothetical protein P3TCK_22525 [Photobacterium profundum 3TCK], gi\|...	107.0	[0..3]	[79..4]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSIHGHEVL NMMIESGEQY THTSLEAAIK ARFGERARFH TCSASDMTAA ELVAFLAAKG  60
   61 KFIAVEDGFS THESKICRH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.691	a.4.1	Homeodomain-like
View	Download	0.676	a.4.1	Homeodomain-like
View	Download	0.531	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.522	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.494	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.451	a.24.15	FAD-dependent thiol oxidase
View	Download	0.442	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.441	a.4.1	Homeodomain-like
View	Download	0.441	a.4.1	Homeodomain-like
View	Download	0.405	a.4.1	Homeodomain-like
View	Download	0.401	d.40.1	CI-2 family of serine protease inhibitors
View	Download	0.330	a.159.4	Description not found.
View	Download	0.324	a.4.1	Homeodomain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits