YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16503171, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16503171, gi|....

Description	E-value	Query Range	Subject Range
FLHD_SALTY - Transcriptional activator flhD OS=Salmonella typhimurium GN=flhD PE=3 SV=1 FLHD_SALPU - Flagellar transcriptional regulator FlhD OS=Salmonella pullorum GN=flhD PE=3 SV=1 FLHD_SALPB - Transcriptional activator flhD OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=flhD PE=3 ... FLHD_SALHS - Flagellar transcriptional regulator FlhD OS=Salmonella heidelberg (strain SL476) GN=flhD PE=3 SV=1 FLHD_SALTY - Flagellar transcriptional regulator FlhD OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700... FLHD_SALNS - Flagellar transcriptional regulator FlhD OS=Salmonella newport (strain SL254) GN=flhD PE=3 SV=1 FLHD_SALSV - Flagellar transcriptional regulator FlhD OS=Salmonella schwarzengrund (strain CVM19633) GN=flhD PE=3... gi\|194455360, gi... - gi\|194468996\|ref\|ZP_03074980.1\| flagellar transcriptional activator FlhD [Salmonella enterica subsp.... FLHD_SALPB - Flagellar transcriptional regulator FlhD OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=... gi\|205339209, gi... - gi\|205339209\|gb\|EDZ25973.1\| flagellar transcriptional activator FlhD [Salmonella enterica subsp. ent... FLHD_SALTY - Flagellar transcriptional regulator FlhD OS=Salmonella typhimurium GN=flhD PE=3 SV=1 gi\|197288656, gi... - gi\|197288656\|gb\|EDY28031.1\| flagellar transcriptional activator FlhD [Salmonella enterica subsp. ent... FLHD_SALTI - Flagellar transcriptional regulator FlhD OS=Salmonella typhi GN=flhD PE=3 SV=1 gi\|195633906, gi... - gi\|195633906\|gb\|EDX52258.1\| flagellar transcriptional activator FlhD [Salmonella enterica subsp. ent... gi\|168259795, gi... - gi\|205350556\|gb\|EDZ37187.1\| flagellar transcriptional activator FlhD [Salmonella enterica subsp. ent... gi\|205322870, gi... - gi\|205322870\|gb\|EDZ10709.1\| flagellar transcriptional activator FlhD [Salmonella enterica subsp. ent... gi\|205331997, gi... - gi\|205331997\|gb\|EDZ18761.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica sero... gi\|205327870, gi... - gi\|205327870\|gb\|EDZ14634.1\| flagellar transcriptional activator FlhD [Salmonella enterica subsp. ent... FLHD_SALTI - Transcriptional activator flhD OS=Salmonella typhi GN=flhD PE=3 SV=1 gi\|213583219 - gi\|213583219\|ref\|ZP_03365045.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica ... gi\|213426375 - gi\|213426375\|ref\|ZP_03359125.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica ... gi\|238912498 - gi\|238912498\|ref\|ZP_04656335.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica ... gi\|213999616 - gi\|213999616\|ref\|ZP_03410351.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica ... gi\|213647166 - gi\|213647166\|ref\|ZP_03377219.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica ... gi\|204320117, gi... - gi\|204931073\|ref\|ZP_03221899.1\| flagellar transcriptional activator FlhD [Salmonella enterica subsp.... gi\|197265939, gi... - gi\|197265939\|ref\|ZP_03166013.1\| flagellar transcriptional activator FlhD [Salmonella enterica subsp.... gi\|213163274 - gi\|213163274\|ref\|ZP_03348984.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica ... gi\|213021972 - gi\|213021972\|ref\|ZP_03336419.1\| transcriptional activator FlhD [Salmonella enterica subsp. enterica ...	177.0	[0..4]	[116..1]
gi\|67009947, gi\|... - gi\|67009947\|dbj\|BAD99457.1\| transcriptional activator [Shigella boydii], gi\|67009942\|dbj\|BAD99454.1\|... gi\|89108732, gi\|... - gi\|89108732\|ref\|AP_002512.1\| DNA-binding transcriptional dual regulator with FlhC [Escherichia coli ... gi\|67009973, gi\|... - gi\|67009973\|dbj\|BAD99471.1\| transcriptional activator [Shigella dysenteriae], gi\|67009970\|dbj\|BAD994... FLHD_ECOUT - Flagellar transcriptional regulator FlhD OS=Escherichia coli (strain UTI89 / UPEC) GN=flhD PE=3 SV=1 FLHD_SHISS - Flagellar transcriptional regulator FlhD OS=Shigella sonnei (strain Ss046) GN=flhD PE=3 SV=1 FLHD_SHIDS - Flagellar transcriptional regulator FlhD OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=flhD P... FLHD_ECOK1 - Flagellar transcriptional regulator FlhD OS=Escherichia coli O1:K1 / APEC GN=flhD PE=3 SV=1 gi\|67009979 - gi\|67009979\|dbj\|BAD99475.1\| transcriptional activator [Shigella sonnei] gi\|68304086\|gb\|A... - FlhD [Escherichia coli] FLHD_ECO55 - Flagellar transcriptional regulator FlhD OS=Escherichia coli (strain 55989 / EAEC) GN=flhD PE=3 SV=1 gi\|254288740, gi... - gi\|254288740\|ref\|YP_003054488.1\| transcriptional activator FlhD [Escherichia coli BL21(DE3)], gi\|253... FLHD_ECO7I - Flagellar transcriptional regulator FlhD OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=flhD PE... FLHD_ECOLU - Flagellar transcriptional regulator FlhD OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=... gi\|226900607, gi... - gi\|237705850\|ref\|ZP_04536331.1\| transcriptional activator flhD [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|253973853, gi... - gi\|254161952\|ref\|YP_003045060.1\| transcriptional activator FlhD [Escherichia coli B str. REL606], gi... FLHD_ECOSE - Flagellar transcriptional regulator FlhD OS=Escherichia coli (strain SE11) GN=flhD PE=3 SV=1 FLHD_ECO8A - Flagellar transcriptional regulator FlhD OS=Escherichia coli O8 (strain IAI1) GN=flhD PE=3 SV=1 FLHD_ECO45 - Flagellar transcriptional regulator FlhD OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=flhD PE=... FLHD_ECO81 - Flagellar transcriptional regulator FlhD OS=Escherichia coli O81 (strain ED1a) GN=flhD PE=3 SV=1 gi\|49176166, gi\|... - gi\|49176166\|ref\|NP_416406.3\| transcriptional activator FlhD [Escherichia coli K12], gi\|1788202\|gb\|AA... gi\|73026, gi\|145... - pir\|\|XMECFB flagellar transcription activator flbB - Escherichia coli (strain K-12), gi\|68304086\|g... gi\|26108564, gi\|... - gi\|26248160\|ref\|NP_754200.1\| transcriptional activator FlhD [Escherichia coli CFT073], gi\|26108564\|g... FLHD_ECODH - Flagellar transcriptional regulator FlhD OS=Escherichia coli (strain K12 / DH10B) GN=flhD PE=3 SV=1	172.0	[0..1]	[116..1]
gi\|67009939 - gi\|67009939\|dbj\|BAD99452.1\| transcriptional activator [Shigella boydii]	172.0	[0..1]	[116..1]
gi\|13362070 - gi\|13362070\|dbj\|BAB36025.1\| regulator of flagellar biosynthesis FlhD [Escherichia coli O157:H7 str. ... gi\|13362070 - gi\|13362070\|dbj\|BAB36025.1\| regulator of flagellar biosynthesis FlhD [Escherichia coli O157:H7] gi\|209767206, gi... - pir\|\|F85802 regulator of flagellar biosynthesis FlhD [imported] - Escherichia coli (strain O157:H7, ... gi\|15802304, gi\|... - gi\|15802304\|ref\|NP_288329.1\| transcriptional activator FlhD [Escherichia coli O157:H7 EDL933], gi\|12...	171.0	[0..1]	[116..1]
FLHD_SHIBS - Flagellar transcriptional regulator FlhD OS=Shigella boydii serotype 4 (strain Sb227) GN=flhD PE=3 S... gi\|67009919, gi\|... - gi\|67009919\|dbj\|BAD99440.1\| transcriptional activator [Shigella flexneri], gi\|67009916\|dbj\|BAD99438.... gi\|67009925, gi\|... - gi\|67009925\|dbj\|BAD99444.1\| transcriptional activator [Shigella boydii], gi\|67009922\|dbj\|BAD99442.1\|...	171.0	[0..1]	[116..1]
FLHD_SERMA - Flagellar transcriptional regulator FlhD OS=Serratia marcescens GN=flhD PE=3 SV=1	171.0	[0..1]	[116..1]
gi\|1095359, gi\|2... - pir\|\|S61276 gene flhD protein - Serratia liquefaciens, gi\|1095359\|prf\|\|2108367A flhD gene	170.0	[0..1]	[116..1]
gi\|76578716, gi\|... - gi\|76809263\|ref\|YP_331499.1\| transcriptional activator FlhD [Burkholderia pseudomallei 1710b], gi\|76...	169.0	[0..3]	[107..116]
gi\|67009928 - gi\|67009928\|dbj\|BAD99446.1\| transcriptional activator [Shigella dysenteriae]	169.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTMHTSELL KHIYDINLSY LLLAQRLIVQ DKASAMFRLG INEEMANTLG ALTLPQMVKL  60
   61 AETNQLVCHF RFDDHQTITR LTQDSRVDDL QQIHTGIMLS TRLLNEVDDT ARKKRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.045757
Match:	1g8eA
Description:	Flagellar transcriptional activator FlhD
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits