YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29141546, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	514 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29141546, gi|....

Description	E-value	Query Range	Subject Range
lcl\|NC_016856.1_... - [gene=nhaB] [protein=sodium/proton antiporter] [protein_id=YP_005237742.1] [location=1917517..191906... NHAB_SALTY - Na(+)/H(+) antiporter NhaB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=nhaB P... NHAB_SALTY - Na(+)/H(+) antiporter nhaB OS=Salmonella typhimurium GN=nhaB PE=3 SV=1 gi\|205339309, gi... - gi\|205339309\|gb\|EDZ26073.1\| Na+/H+ antiporter NhaB [Salmonella enterica subsp. enterica serovar Heid... NHAB_SALTY - Na(+)/H(+) antiporter nhaB OS=Salmonella typhimurium GN=nhaB PE=3 SV=1 NHAB_SALHS - Na(+)/H(+) antiporter NhaB OS=Salmonella heidelberg (strain SL476) GN=nhaB PE=3 SV=1 gi\|167993257, gi... - gi\|205328673\|gb\|EDZ15437.1\| Na+/H+ antiporter NhaB [Salmonella enterica subsp. enterica serovar 4,[5...	0.0	[1..514]	[1..514]
gi\|195634284, gi... - gi\|195634284\|gb\|EDX52636.1\| Na+/H+ antiporter NhaB [Salmonella enterica subsp. enterica serovar Newp... NHAB_SALCH - Na(+)/H(+) antiporter nhaB OS=Salmonella choleraesuis GN=nhaB PE=3 SV=1 gi\|168259959, gi... - gi\|205351110\|gb\|EDZ37741.1\| Na+/H+ antiporter NhaB [Salmonella enterica subsp. enterica serovar Hada... NHAB_SALPC - Na(+)/H(+) antiporter NhaB OS=Salmonella paratyphi C (strain RKS4594) GN=nhaB PE=3 SV=1 NHAB_SALEP - Na(+)/H(+) antiporter NhaB OS=Salmonella enteritidis PT4 (strain P125109) GN=nhaB PE=3 SV=1 NHAB_SALCH - Na(+)/H(+) antiporter NhaB OS=Salmonella choleraesuis (strain SC-B67) GN=nhaB PE=3 SV=1 NHAB_SALDC - Na(+)/H(+) antiporter NhaB OS=Salmonella dublin (strain CT_02021853) GN=nhaB PE=3 SV=1 NHAB_SALCH - Na(+)/H(+) antiporter nhaB OS=Salmonella choleraesuis GN=nhaB PE=3 SV=1	0.0	[1..514]	[1..514]
NHAB_SALPA - Na(+)/H(+) antiporter nhaB OS=Salmonella paratyphi A GN=nhaB PE=3 SV=1 NHAB_SALPA - Na(+)/H(+) antiporter NhaB OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=nhaB PE=3 SV=1 NHAB_SALPK - Na(+)/H(+) antiporter NhaB OS=Salmonella paratyphi A (strain AKU_12601) GN=nhaB PE=3 SV=1	0.0	[1..514]	[1..514]
NHAB_PHOPR - Na(+)/H(+) antiporter NhaB OS=Photobacterium profundum GN=nhaB PE=3 SV=1 NHAB_PHOPR - Na(+)/H(+) antiporter NhaB OS=Photobacterium profundum (strain SS9) GN=nhaB PE=3 SV=1	0.0	[1..510]	[1..513]
gi\|90328442, gi\|... - gi\|90410811\|ref\|ZP_01218826.1\| putative Na+/H+-exchanging protein [Photobacterium profundum 3TCK], g...	0.0	[1..510]	[1..513]
gi\|89073259, gi\|... - gi\|89073259\|ref\|ZP_01159789.1\| putative Na+/H+-exchanging protein [Photobacterium sp. SKA34], gi\|890...	0.0	[1..514]	[1..517]
gi\|26247499, gi\|... - gi\|26247499\|ref\|NP_753539.1\| Na(+)/H(+) antiporter 2 [Escherichia coli CFT073], gi\|26107900\|gb\|AAN80...	0.0	[1..513]	[19..531]
gi\|90579248, gi\|... - gi\|90579248\|ref\|ZP_01235058.1\| putative Na+/H+-exchanging protein [Vibrio angustum S14], gi\|90440081...	0.0	[1..514]	[1..517]
gi\|91227373, gi\|... - gi\|91227373\|ref\|ZP_01261762.1\| sodium/proton antiporter [Vibrio alginolyticus 12G01], gi\|91188637\|gb...	0.0	[1..510]	[1..513]
gi\|75855821, gi\|... - gi\|75855821\|ref\|ZP_00763462.1\| COG3067: Na+/H+ antiporter [Vibrio sp. Ex25], gi\|116185161\|ref\|ZP_014... NHAB_VIBAL - Na(+)/H(+) antiporter NhaB OS=Vibrio alginolyticus GN=nhaB PE=1 SV=1	0.0	[1..510]	[1..513]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISWGRAMW RNFLGQSPDW YKLALLVFLI VNPFIFLANP FVAGWLLVAE FIFTLAMALK  60
   61 CYPLLPGGLL AIEAVIIGMT SAAHVREEVA ANLEVLLLLM FMVAGIYFMK QLLLFIFTRL 120
  121 LLSIRSKMVL SLAFCVAAAF LSAFLDALTV VAVVISVAVG FYGIYHRVAS SRGEENDMLD 180
  181 DSH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [184-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDPHYKTVLE QFRGFLRSLM MHAGVGTALG GVMTMVGEPQ NLIIAKAAGW HFGDFFLRMS  60
   61 PVTVPVLVCG LLTCMLVEKM RWFGYGETLP EKVRDVLQQF DDQSRKKRTR QDKIKLIVQA 120
  121 VIGVWLVTAL ALHLAEVGLI GLSVIILATA LTGV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [338-514]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDEHAIGKAF TESLPFTALL TVFFSIVAVI IDQHLFAPII QFVLQASEHA QLTLFYLFNG  60
   61 LLSSISDNVF VGTIYINEAK AAMENGAISL KQFELLAVAI NTGTNLPSVA TPNGQAAFLF 120
  121 LLTSALAPLI RLSYGRMVWM ALPYTIVLTL IGLLCVEFTL APATEWMTQA GWLATLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits