YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16760694
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	510 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16760694.

Description	E-value	Query Range	Subject Range
gi\|205328650, gi... - gi\|205328650\|gb\|EDZ15414.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar 4,[5],... gi\|16420335 - gi\|16420335\|gb\|AAL20719.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar...	887.0	[0..1]	[510..1]
gi\|56127534, gi\|... - gi\|56413277\|ref\|YP_150352.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Parat... gi\|197093679, gi... - gi\|197362202\|ref\|YP_002141839.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar P... gi\|194457017, gi... - gi\|194470653\|ref\|ZP_03076637.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Ke... gi\|168820551, gi... - gi\|205342721\|gb\|EDZ29485.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Weltev... gi\|168233848, gi... - gi\|205332140\|gb\|EDZ18904.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Kentuc...	887.0	[0..1]	[510..1]
gi\|238912132 - gi\|238912132\|ref\|ZP_04655969.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Te... gi\|204927955, gi... - gi\|204927955\|ref\|ZP_03219156.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Ja... gi\|197250495, gi... - gi\|197250495\|ref\|YP_002146220.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar A... gi\|194735382, gi... - gi\|194735382\|ref\|YP_002114838.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar S... gi\|205350985, gi... - gi\|205350985\|gb\|EDZ37616.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Hadar ... gi\|197289293, gi... - gi\|197289293\|gb\|EDY28660.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Schwar... gi\|62128000, gi\|... - gi\|62180367\|ref\|YP_216784.1\| hypothetical protein SC1797 [Salmonella enterica subsp. enterica serova...	886.0	[0..1]	[510..1]
gi\|168750752, gi... - gi\|188015069\|gb\|EDU53191.1\| SpoVR family protein [Escherichia coli O157:H7 str. EC4113], gi\|16875075... gi\|189356345, gi... - gi\|189356345\|gb\|EDU74764.1\| SpoVR family protein [Escherichia coli O157:H7 str. EC4401], gi\|16875655... gi\|189360042, gi... - gi\|189360042\|gb\|EDU78461.1\| SpoVR family protein [Escherichia coli O157:H7 str. EC4486], gi\|16877108... gi\|117623402, gi... - gi\|117623402\|ref\|YP_852315.1\| hypothetical protein APECO1_300 [Escherichia coli APEC O1], gi\|1155125... gi\|26107903, gi\|... - gi\|26247502\|ref\|NP_753542.1\| hypothetical protein c1637 [Escherichia coli CFT073], gi\|26107903\|gb\|AA... gi\|209772660, gi... - pir\|\|C85697 probable sporulation protein ycgB [imported] - Escherichia coli (strain O157:H7, substra... gi\|12514885, gi\|... - gi\|15801410\|ref\|NP_287427.1\| hypothetical protein Z1951 [Escherichia coli O157:H7 EDL933], gi\|125148... gi\|13361147, gi\|... - gi\|15830937\|ref\|NP_309710.1\| putative sporulation protein [Escherichia coli O157:H7], gi\|13361147\|db... gi\|91071975, gi\|... - gi\|91210401\|ref\|YP_540387.1\| hypothetical protein UTI89_C1374 [Escherichia coli UTI89], gi\|91071975\|... gi\|13361147, gi\|... - gi\|15830937\|ref\|NP_309710.1\| SpoVR family protein [Escherichia coli O157:H7 str. Sakai], gi\|13361147... gi\|209158317, gi... - gi\|209396917\|ref\|YP_002270128.1\| SpoVR family protein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|227836603, gi... - gi\|227886399\|ref\|ZP_04004204.1\| stage V sporulation protein R [Escherichia coli 83972], gi\|227836603... gi\|218364881, gi... - gi\|218558112\|ref\|YP_002391025.1\| SpoVR family protein [Escherichia coli S88], gi\|218364881\|emb\|CAR02... gi\|237705144, gi... - gi\|237705144\|ref\|ZP_04535625.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|218431800, gi... - gi\|218704703\|ref\|YP_002412222.1\| SpoVR family protein [Escherichia coli UMN026], gi\|218431800\|emb\|CA... gi\|189000022, gi... - gi\|189000022\|gb\|EDU69008.1\| SpoVR family protein [Escherichia coli O157:H7 str. EC4076], gi\|16878254... gi\|195938843 - gi\|195938843\|ref\|ZP_03084225.1\| hypothetical protein EscherichcoliO157_20867 [Escherichia coli O157:... gi\|208816253, gi... - gi\|208816253\|ref\|ZP_03257432.1\| SpoVR family protein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|254792665, gi... - gi\|254792665\|ref\|YP_003077502.1\| hypothetical protein ECSP_1585 [Escherichia coli O157:H7 str. TW143... gi\|208822461, gi... - gi\|208822461\|ref\|ZP_03262780.1\| SpoVR family protein [Escherichia coli O157:H7 str. EC4042], gi\|2087...	873.0	[0..1]	[510..1]
gi\|82776519, gi\|... - gi\|82776519\|ref\|YP_402868.1\| hypothetical protein SDY_1225 [Shigella dysenteriae Sd197], gi\|81240667... gi\|75241988, gi\|... - gi\|75241988\|ref\|ZP_00725782.1\| COG2719: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|110641413, gi... - gi\|110641413\|ref\|YP_669143.1\| SpoVR family protein [Escherichia coli 536], gi\|110343005\|gb\|ABG69242....	872.0	[0..1]	[510..1]
gi\|75255038, gi\|... - gi\|75255038\|ref\|ZP_00726948.1\| COG2719: Uncharacterized conserved protein [Escherichia coli E22], gi... EG11516 - SpoVR family stationary phase protein / SpoVR family stationary phase protein, function unknown YCGB_ECOLI - Hypothetical protein ycgB - Escherichia coli gi\|188495508, gi... - gi\|188495508\|ref\|ZP_03002778.1\| SpoVR family protein [Escherichia coli 53638], gi\|188490707\|gb\|EDU65... gi\|209918427, gi... - gi\|209918427\|ref\|YP_002292511.1\| SpoVR family protein [Escherichia coli SE11], gi\|209911686\|dbj\|BAG7... gi\|124528428, gi... - gi\|124528428\|ref\|ZP_01699738.1\| SpoVR family protein [Escherichia coli B], gi\|124500660\|gb\|EAY48131.... gi\|218553743, gi... - gi\|218553743\|ref\|YP_002386656.1\| SpoVR family protein [Escherichia coli IAI1], gi\|218360511\|emb\|CAQ9... gi\|218351434, gi... - gi\|218694702\|ref\|YP_002402369.1\| SpoVR family protein [Escherichia coli 55989], gi\|218351434\|emb\|CAU... EG11516 - SpoVR family stationary phase protein / SpoVR family stationary phase protein, function unknown gi\|194437145, gi... - gi\|83587332\|ref\|ZP_00925960.1\| COG2719: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|157077889, gi... - gi\|75190243\|ref\|ZP_00703510.1\| COG2719: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|157066371, gi... - gi\|75195341\|ref\|ZP_00705411.1\| COG2719: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|192955515, gi... - gi\|75233915\|ref\|ZP_00718375.1\| COG2719: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|89108033, gi\|... - gi\|89108033\|ref\|AP_001813.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... gi\|254161270, gi... - gi\|254161270\|ref\|YP_003044378.1\| hypothetical protein ECB_01163 [Escherichia coli B str. REL606], gi... gi\|253773814, gi... - gi\|254288078\|ref\|YP_003053826.1\| hypothetical protein ECD_01163 [Escherichia coli BL21(DE3)], gi\|253... gi\|251784695, gi... - gi\|251784695\|ref\|YP_002998999.1\| hypothetical protein B21_01173 [Escherichia coli BL21], gi\|24237696... gi\|238860299, gi... - gi\|238900419\|ref\|YP_002926215.1\| hypothetical protein BWG_1013 [Escherichia coli BW2952], gi\|2388602... gi\|169755372, gi... - gi\|170020444\|ref\|YP_001725398.1\| SpoVR family protein [Escherichia coli ATCC 8739], gi\|169755372\|gb\|... gi\|169888651, gi... - gi\|170080816\|ref\|YP_001730136.1\| hypothetical protein ECDH10B_1241 [Escherichia coli str. K-12 subst...	871.0	[0..1]	[510..1]
gi\|30062705, gi\|... - gi\|30062705\|ref\|NP_836876.1\| hypothetical protein S1265 [Shigella flexneri 2a str. 2457T], gi\|300409...	870.0	[0..1]	[510..1]
gi\|73855195, gi\|... - gi\|74311718\|ref\|YP_310137.1\| hypothetical protein SSON_1180 [Shigella sonnei Ss046], gi\|73855195\|gb\|...	870.0	[0..1]	[510..1]
gi\|194415820, gi... - gi\|75212626\|ref\|ZP_00712624.1\| COG2719: Uncharacterized conserved protein [Escherichia coli B171], g...	869.0	[0..1]	[510..1]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMIDSMNKD TTRLSDGPDW TFDLLDVYLA EIDRVAKLYQ LDTYPHQIEV ITSEQMMDAY  60
   61 SSVGMPINYP HWSFGKKFIE TERLYKHGQQ GLAYEIVINS NPCIAYLMEE NTITMQALVM 120
  121 AHACYGHNSF FKNNYLFRSW TDASSIVDYL IFAR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [155-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYITRCEERY GVDEVEKLLD SCHALMNYGV DRYKRPQKIS LQEEKARQKS REEYLQSQVN  60
   61 MLWRTLPKRE EEKTVAEARR FPAEPQENLL YFMEKNAPLL EPWQREILRI VRKVSQYFYP 120
  121 QKQTQVMNEG WATFWHYTIL NHLYDE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.600	a.24.16	Nucleotidyltransferase substrate binding subunit/domain
View	Download	0.571	d.92.1	Metalloproteases ("zincins"), catalytic domain
View	Download	0.439	a.24.4	Hemerythrin
View	Download	0.402	d.20.1	UBC-like
View	Download	0.368	d.20.1	UBC-like
View	Download	0.361	a.69.2	Ypt/Rab-GAP domain of gyp1p
View	Download	0.286	a.25.1	Ferritin-like
View	Download	0.276	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain

Predicted Domain #3

Region A:
Residues: [301-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKVTERFMLE FLHSHTNVVF QPPYNSPWYS GINPYALGFA MFQDIKRICQ SPTDEDKYWF  60
   61 PDIAGSDWLE TLHFAMRDFK DESFISQFLS PKVMRDFRFF TVLDDDRHNY LEISAIHNEE 120
  121 GYREIRSKLS SQYNLSNL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.725	c.10.2	L domain-like
View	Download	0.725	c.10.2	L domain-like
View	Download	0.657	c.23.4	Succinyl-CoA synthetase domains
View	Download	0.657	c.23.4	Succinyl-CoA synthetase domains
View	Download	0.363	c.10.2	L domain-like
View	Download	0.346	d.110.7	Description not found.
View	Download	0.336	a.118.23	Description not found.
View	Download	0.319	c.55.3	Ribonuclease H-like
View	Download	0.311	c.2.1	NAD(P)-binding Rossmann-fold domains

Predicted Domain #4

Region A:
Residues: [439-510]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPNIQVWNVD LRGDRSLTLR YIPHNRAPLD KGRKEVLKHV HRLWGFDVML EQQNEDGSVE  60
   61 LLERCPPRMN TL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.909	N/A	N/A	d.15.7	Immunoglobulin-binding domains
View	Download	0.909	N/A	N/A	d.15.7	Immunoglobulin-binding domains
View	Download	0.859	N/A	N/A	d.58.36	Sulfite reductase, domains 1 and 3
View	Download	0.789	N/A	N/A	d.15.7	Immunoglobulin-binding domains
View	Download	0.789	N/A	N/A	d.15.7	Immunoglobulin-binding domains
View	Download	0.767	N/A	N/A	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.753	N/A	N/A	d.58.36	Sulfite reductase, domains 1 and 3
View	Download	0.749	N/A	N/A	b.1.1	Immunoglobulin
View	Download	0.744	N/A	N/A	d.12.1	Ribosomal proteins L23 and L15e
View	Download	0.719	N/A	N/A	b.1.2	Fibronectin type III

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits