YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16760671
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16760671.

Description	E-value	Query Range	Subject Range
gi\|115512551, gi... - gi\|117623427\|ref\|YP_852340.1\| outer membrane lipoprotein LolB [Escherichia coli APEC O1], gi\|1155125... gi\|91210430, gi\|... - gi\|91210430\|ref\|YP_540416.1\| outer membrane lipoprotein LolB [Escherichia coli UTI89], gi\|91072004\|g... gi\|226899929, gi... - gi\|237705172\|ref\|ZP_04535653.1\| outer membrane lipoprotein LolB [Escherichia sp. 3_2_53FAA], gi\|2268...	5.0E-79	[1..207]	[23..229]
gi\|227836573, gi... - gi\|227886369\|ref\|ZP_04004174.1\| outer membrane lipoprotein LolB [Escherichia coli 83972], gi\|2278365... gi\|26247532, gi\|... - gi\|26247532\|ref\|NP_753572.1\| outer membrane lipoprotein LolB [Escherichia coli CFT073], gi\|26107933\|...	5.0E-79	[1..207]	[23..229]
gi\|75255055 - gi\|75255055\|ref\|ZP_00726960.1\| COG3017: Outer membrane lipoprotein involved in outer membrane biogen...	7.0E-79	[1..207]	[18..224]
LOLB_SALNS - Outer-membrane lipoprotein LolB OS=Salmonella newport (strain SL254) GN=lolB PE=3 SV=1 gi\|205342558, gi... - gi\|205342558\|gb\|EDZ29322.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica ser... gi\|194458011, gi... - gi\|194471647\|ref\|ZP_03077631.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica... LOLB_SALCH - Outer-membrane lipoprotein lolB OS=Salmonella choleraesuis GN=lolB PE=3 SV=1 LOLB_SALHS - Outer-membrane lipoprotein LolB OS=Salmonella heidelberg (strain SL476) GN=lolB PE=3 SV=1 gi\|168233810, gi... - gi\|205332130\|gb\|EDZ18894.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica ser... gi\|205328663, gi... - gi\|205328663\|gb\|EDZ15427.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=lolB] [protein=outer membrane lipoprotein LolB] [protein_id=YP_005237708.1] [location=1886713.... gi\|168259996, gi... - gi\|205350608\|gb\|EDZ37239.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica ser... gi\|205339662, gi... - gi\|205339662\|gb\|EDZ26426.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica ser... gi\|205321984, gi... - gi\|205321984\|gb\|EDZ09823.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica ser... LOLB_SALPB - Outer-membrane lipoprotein LolB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lolB PE=3... LOLB_SALTY - Outer-membrane lipoprotein lolB OS=Salmonella typhimurium GN=lolB PE=3 SV=2 LOLB_SALPC - Outer-membrane lipoprotein LolB OS=Salmonella paratyphi C (strain RKS4594) GN=lolB PE=3 SV=1 gi\|204927663, gi... - gi\|204927663\|ref\|ZP_03218864.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica... gi\|200389957, gi... - gi\|200389957\|ref\|ZP_03216568.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica... LOLB_SALEP - Outer-membrane lipoprotein LolB OS=Salmonella enteritidis PT4 (strain P125109) GN=lolB PE=3 SV=1 LOLB_SALG2 - Outer-membrane lipoprotein LolB OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=lolB PE=3 S... gi\|197264183, gi... - gi\|197264183\|ref\|ZP_03164257.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica... LOLB_SALA4 - Outer-membrane lipoprotein LolB OS=Salmonella agona (strain SL483) GN=lolB PE=3 SV=1 LOLB_SALDC - Outer-membrane lipoprotein LolB OS=Salmonella dublin (strain CT_02021853) GN=lolB PE=3 SV=1 LOLB_SALPK - Outer-membrane lipoprotein LolB OS=Salmonella paratyphi A (strain AKU_12601) GN=lolB PE=3 SV=1 LOLB_SALTY - Outer-membrane lipoprotein lolB OS=Salmonella typhimurium GN=lolB PE=3 SV=2 LOLB_SALTY - Outer-membrane lipoprotein LolB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=l... LOLB_SALPB - Outer-membrane lipoprotein lolB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lolB PE=3... LOLB_SALPA - Outer-membrane lipoprotein lolB OS=Salmonella paratyphi A GN=lolB PE=3 SV=1 LOLB_SALPA - Outer-membrane lipoprotein LolB OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=lolB PE=3 S... LOLB_SALCH - Outer-membrane lipoprotein lolB OS=Salmonella choleraesuis GN=lolB PE=3 SV=1 LOLB_SALCH - Outer-membrane lipoprotein LolB OS=Salmonella choleraesuis (strain SC-B67) GN=lolB PE=3 SV=1 gi\|238913679 - gi\|238913679\|ref\|ZP_04657516.1\| outer membrane lipoprotein LolB [Salmonella enterica subsp. enterica...	3.0E-78	[1..207]	[1..207]
LOLB_SHIDS - Outer-membrane lipoprotein LolB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lolB PE=3 SV=1	7.0E-78	[1..207]	[1..207]
gi\|208732396, gi... - gi\|208815748\|ref\|ZP_03256927.1\| outer membrane lipoprotein LolB [Escherichia coli O157:H7 str. EC404... LOLB_ECO5E - Outer-membrane lipoprotein LolB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=lolB PE=3 SV=1 LOLB_ECOSE - Outer-membrane lipoprotein LolB OS=Escherichia coli (strain SE11) GN=lolB PE=3 SV=1 gi\|217318405, gi... - gi\|217327978\|ref\|ZP_03444060.1\| outer membrane lipoprotein LolB [Escherichia coli O157:H7 str. TW145... LOLB_ECO8A - Outer-membrane lipoprotein LolB OS=Escherichia coli O8 (strain IAI1) GN=lolB PE=3 SV=1 LOLB_ECO57 - Outer-membrane lipoprotein LolB OS=Escherichia coli O157:H7 GN=lolB PE=3 SV=1 LOLB_ECO55 - Outer-membrane lipoprotein LolB OS=Escherichia coli (strain 55989 / EAEC) GN=lolB PE=3 SV=1 LOLB_ECOLU - Outer-membrane lipoprotein LolB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=lolB PE=3... LOLB_ECOLI - Outer-membrane lipoprotein lolB precursor - Escherichia coli gi\|188015065, gi... - gi\|188015065\|gb\|EDU53187.1\| outer membrane lipoprotein LolB [Escherichia coli O157:H7 str. EC4113], ... gi\|168771098, gi... - gi\|189360072\|gb\|EDU78491.1\| outer membrane lipoprotein LolB [Escherichia coli O157:H7 str. EC4486], ... gi\|168776898, gi... - gi\|187767803\|gb\|EDU31647.1\| outer membrane lipoprotein LolB [Escherichia coli O157:H7 str. EC4196], ... gi\|168782565, gi... - gi\|188999980\|gb\|EDU68966.1\| outer membrane lipoprotein LolB [Escherichia coli O157:H7 str. EC4076], ... gi\|168787713, gi... - gi\|189372540\|gb\|EDU90956.1\| outer membrane lipoprotein LolB [Escherichia coli O157:H7 str. EC869], g... gi\|24051513, gi\|... - gi\|24112608\|ref\|NP_707118.1\| outer membrane lipoprotein LolB [Shigella flexneri 2a str. 301], gi\|240... LOLB_ECODH - Outer-membrane lipoprotein LolB OS=Escherichia coli (strain K12 / DH10B) GN=lolB PE=3 SV=1 gi\|30040981, gi\|... - gi\|30062733\|ref\|NP_836904.1\| outer membrane lipoprotein LolB [Shigella flexneri 2a str. 2457T], gi\|3... gi\|195939097 - gi\|195939097\|ref\|ZP_03084479.1\| outer membrane lipoprotein LolB [Escherichia coli O157:H7 str. EC402... EG11293 - lipoprotein localization factor / OM lipoprotein required for localization of lipoproteins; essentia... gi\|208728444, gi... - gi\|208808643\|ref\|ZP_03250980.1\| outer membrane lipoprotein LolB [Escherichia coli O157:H7 str. EC420... gi\|194425836, gi... - gi\|75212647\|ref\|ZP_00712645.1\| COG3017: Outer membrane lipoprotein involved in outer membrane biogen... gi\|188494781, gi... - gi\|75511755\|ref\|ZP_00734384.1\| COG3017: Outer membrane lipoprotein involved in outer membrane biogen... LOLB_SHIBS - Outer-membrane lipoprotein LolB OS=Shigella boydii serotype 4 (strain Sb227) GN=lolB PE=3 SV=1 LOLB_SHIFL - Outer-membrane lipoprotein LolB OS=Shigella flexneri GN=lolB PE=3 SV=1 gi\|254792679, gi... - gi\|254792679\|ref\|YP_003077516.1\| chaperone for lipoproteins [Escherichia coli O157:H7 str. TW14359],... gi\|254161291, gi... - gi\|254161291\|ref\|YP_003044399.1\| outer membrane lipoprotein LolB precursor [Escherichia coli B str. ... gi\|254288099, gi... - gi\|254288099\|ref\|YP_003053847.1\| outer membrane lipoprotein LolB precursor [Escherichia coli BL21(DE... gi\|251784715, gi... - gi\|251784715\|ref\|YP_002999019.1\| hypothetical protein B21_01194 [Escherichia coli BL21], gi\|24237698... gi\|194437033, gi... - gi\|83587353\|ref\|ZP_00925981.1\| COG3017: Outer membrane lipoprotein involved in outer membrane biogen... LOLB_ECOBW - Outer-membrane lipoprotein LolB OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=lolB PE=3 SV=1 LOLB_ECO24 - Outer-membrane lipoprotein LolB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=lolB PE=3 SV... gi\|124528408, gi... - gi\|124528408\|ref\|ZP_01699718.1\| outer membrane lipoprotein LolB [Escherichia coli B], gi\|124500640\|g... LOLB_ECOHS - Outer-membrane lipoprotein LolB OS=Escherichia coli O9:H4 (strain HS) GN=lolB PE=3 SV=1 gi\|1651599, gi\|8... - gi\|89108054\|ref\|AP_001834.1\| chaperone for lipoproteins [Escherichia coli str. K-12 substr. W3110], ... gi\|15830968, gi\|... - gi\|15830968\|ref\|NP_309741.1\| outer membrane lipoprotein LolB [Escherichia coli O157:H7 str. Sakai], ... LOLB_SHIF8 - Outer-membrane lipoprotein LolB OS=Shigella flexneri serotype 5b (strain 8401) GN=lolB PE=3 SV=1 LOLB_ECOLC - Outer-membrane lipoprotein LolB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=lolB P... EG11293 - lipoprotein localization factor / OM lipoprotein required for localization of lipoproteins; essentia... gi\|15801438, gi\|... - gi\|15801438\|ref\|NP_287455.1\| outer membrane lipoprotein LolB [Escherichia coli O157:H7 EDL933], gi\|1...	8.0E-78	[1..207]	[1..207]
LOLB_ECOL5 - Outer-membrane lipoprotein LolB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=lolB PE=3 SV=1	9.0E-78	[1..207]	[1..207]
gi\|216524 - gi\|216524\|dbj\|BAA01105.1\| 5-aminolevulinate synthase [Escherichia coli]	2.0E-77	[1..207]	[1..207]
LOLB_ECOL6 - Outer-membrane lipoprotein lolB OS=Escherichia coli O6 GN=lolB PE=3 SV=2 LOLB_ECOL6 - Outer-membrane lipoprotein LolB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=lo...	2.0E-77	[1..207]	[1..207]
LOLB_SHISS - Outer-membrane lipoprotein LolB OS=Shigella sonnei (strain Ss046) GN=lolB PE=3 SV=1	7.0E-77	[1..207]	[1..207]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLPDFRLIR LLPLASLVLT ACTLPGHKGP GKSPDSPQWR QHQQEVRHLN QYQTRGAFAY  60
   61 ISDDQKVYAR FFWQQTGQDR YRLLLTNPLG STELELNAQP GNVQLVDNKG QRYTADDAEE 120
  121 MIGKLTGMPI PLNSLRQWIL GLPGDATDYK LDDQYRLSEV NYHQDGKNWK VVYGGYDSKT 180
  181 QPAMPANMEL SDGSQRIKLK MDNWIVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.0
Match:	1iwmA
Description:	Outer membrane lipoprotein receptor LolB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein transporter activity	5.26309175650793	bayes_pls_golite062009
protein transmembrane transporter activity	5.24235483861853	bayes_pls_golite062009
transporter activity	3.49447699177014	bayes_pls_golite062009
transmembrane transporter activity	3.40253685210141	bayes_pls_golite062009
substrate-specific transporter activity	3.1520022161519	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.10255727756177	bayes_pls_golite062009
protein binding	2.1080237568481	bayes_pls_golite062009
binding	1.76935925638807	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: