YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16760540
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16760540.

Description	E-value	Query Range	Subject Range
lcl\|NC_016856.1_... - [gene=ydiH] [protein=putative cytoplasmic protein] [protein_id=YP_005237235.1] [location=1460003..14... gi\|16419886, gi\|... - gi\|16764717\|ref\|NP_460332.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16419886\|... gi\|56413659, gi\|... - gi\|56413659\|ref\|YP_150734.1\| hypothetical protein SPA1488 [Salmonella enterica subsp. enterica serov... gi\|62179957, gi\|... - gi\|62179957\|ref\|YP_216374.1\| hypothetical protein SC1387 [Salmonella enterica subsp. enterica serova... gi\|207857127, gi... - gi\|207857127\|ref\|YP_002243778.1\| hypothetical protein SEN1678 [Salmonella enterica subsp. enterica s... gi\|224468648, gi... - gi\|224584121\|ref\|YP_002637919.1\| hypothetical protein SPC_2362 [Salmonella enterica subsp. enterica ... gi\|197362583, gi... - gi\|197362583\|ref\|YP_002142220.1\| hypothetical protein SSPA1381 [Salmonella enterica subsp. enterica ... gi\|205352913, gi... - gi\|205352913\|ref\|YP_002226714.1\| hypothetical protein SG1750 [Salmonella enterica subsp. enterica se...	127.0	[0..1]	[75..1]
gi\|73855467, gi\|... - gi\|74311990\|ref\|YP_310409.1\| hypothetical protein SSON_1471 [Shigella sonnei Ss046], gi\|73855467\|gb\|...	116.0	[0..7]	[75..21]
gi\|81245356, gi\|... - gi\|82543945\|ref\|YP_407892.1\| hypothetical protein SBO_1445 [Shigella boydii Sb227], gi\|81245356\|gb\|A... gi\|187427138, gi... - gi\|187730146\|ref\|YP_001880444.1\| hypothetical protein SbBS512_E1886 [Shigella boydii CDC 3083-94], g...	115.0	[0..7]	[75..21]
YDIH_SHIFL - Uncharacterized protein ydiH OS=Shigella flexneri GN=ydiH PE=4 SV=1 gi\|15831646, gi\|... - gi\|15831646\|ref\|NP_310419.1\| hypothetical protein ECs2392 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110615210, gi... - gi\|110805662\|ref\|YP_689182.1\| hypothetical protein SFV_1708 [Shigella flexneri 5 str. 8401], gi\|1106... YDIH_ECOLI - Hypothetical protein ydiH - Escherichia coli YDIH_ECO57 - Uncharacterized protein ydiH OS=Escherichia coli O157:H7 GN=ydiH PE=4 SV=1 gi\|16129641\|ref\|... - predicted protein [Escherichia coli str. K-12 substr. MG1655] gi\|254161746, gi... - gi\|254161746\|ref\|YP_003044854.1\| hypothetical protein ECB_01654 [Escherichia coli B str. REL606], gi... gi\|254288534, gi... - gi\|254288534\|ref\|YP_003054282.1\| hypothetical protein ECD_01654 [Escherichia coli BL21(DE3)], gi\|253... gi\|24052049, gi\|... - gi\|24113074\|ref\|NP_707584.1\| hypothetical protein SF1715 [Shigella flexneri 2a str. 301], gi\|2405204... gi\|75229004 - gi\|75229004\|ref\|ZP_00715591.1\| hypothetical protein EcolB7_01002756 [Escherichia coli B7A] gi\|242377411, gi... - gi\|251785138\|ref\|YP_002999442.1\| hypothetical protein B21_01643 [Escherichia coli BL21], gi\|24237741... gi\|75236859 - gi\|75236859\|ref\|ZP_00720930.1\| hypothetical protein EcolE1_01002038 [Escherichia coli E110019] gi\|238862876, gi... - gi\|238900900\|ref\|YP_002926696.1\| hypothetical protein BWG_1499 [Escherichia coli BW2952], gi\|2388628... gi\|16129641, gi\|... - gi\|1787975\|gb\|AAC74755.1\| predicted protein [Escherichia coli str. K-12 substr. MG1655], gi\|16129641... gi\|75256642 - gi\|75256642\|ref\|ZP_00728259.1\| hypothetical protein EcolE2_01003387 [Escherichia coli E22] gi\|30063199, gi\|... - gi\|30063199\|ref\|NP_837370.1\| hypothetical protein S1847 [Shigella flexneri 2a str. 2457T], gi\|300414... gi\|89108525, gi\|... - gi\|89108525\|ref\|AP_002305.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|12515687, gi\|... - gi\|15802097\|ref\|NP_288119.1\| hypothetical protein Z2713 [Escherichia coli O157:H7 EDL933], gi\|125156... gi\|83585989 - gi\|83585989\|ref\|ZP_00924627.1\| hypothetical protein Ecol1_01002723 [Escherichia coli 101-1] gi\|157157511, gi... - gi\|75190723\|ref\|ZP_00703990.1\| hypothetical protein EcolE_01004034 [Escherichia coli E24377A], gi\|15... gi\|75195762, gi\|... - gi\|75195762\|ref\|ZP_00705832.1\| hypothetical protein EcolH_01001561 [Escherichia coli HS], gi\|1571611... gi\|75209271 - gi\|75209271\|ref\|ZP_00709515.1\| hypothetical protein EcolB_01003578 [Escherichia coli B171] gi\|170081345, gi... - gi\|170081345\|ref\|YP_001730665.1\| hypothetical protein ECDH10B_1820 [Escherichia coli str. K-12 subst... gi\|195937369 - gi\|195937369\|ref\|ZP_03082751.1\| hypothetical protein EscherichcoliO157_13117 [Escherichia coli O157:... gi\|209918999, gi... - gi\|209918999\|ref\|YP_002293083.1\| hypothetical protein ECSE_1808 [Escherichia coli SE11], gi\|20991225... gi\|218554251, gi... - gi\|218554251\|ref\|YP_002387164.1\| hypothetical protein ECIAI1_1737 [Escherichia coli IAI1], gi\|218361... gi\|218351978, gi... - gi\|218695246\|ref\|YP_002402913.1\| hypothetical protein EC55989_1852 [Escherichia coli 55989], gi\|2183...	115.0	[0..7]	[75..21]
gi\|117623864, gi... - gi\|117623864\|ref\|YP_852777.1\| hypothetical protein APECO1_762 [Escherichia coli APEC O1], gi\|1155129... gi\|91210898, gi\|... - gi\|91210898\|ref\|YP_540884.1\| hypothetical protein UTI89_C1877 [Escherichia coli UTI89], gi\|91072472\|... gi\|218365323, gi... - gi\|218558554\|ref\|YP_002391467.1\| hypothetical protein ECS88_1735 [Escherichia coli S88], gi\|21836532... gi\|218689627, gi... - gi\|218689627\|ref\|YP_002397839.1\| hypothetical protein ECED1_1884 [Escherichia coli ED1a], gi\|2184271... gi\|218432280, gi... - gi\|218705183\|ref\|YP_002412702.1\| hypothetical protein ECUMN_1974 [Escherichia coli UMN026], gi\|21843... gi\|237705631, gi... - gi\|237705631\|ref\|ZP_04536112.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|26247935, gi\|... - gi\|26247935\|ref\|NP_753975.1\| hypothetical protein c2080 [Escherichia coli CFT073], gi\|26108338\|gb\|AA... gi\|75241435 - gi\|75241435\|ref\|ZP_00725286.1\| hypothetical protein EcolF_01001727 [Escherichia coli F11] gi\|227885896, gi... - gi\|227885896\|ref\|ZP_04003701.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783707...	115.0	[0..7]	[75..21]
gi\|75513816, gi\|... - gi\|75513816\|ref\|ZP_00736192.1\| hypothetical protein Ecol5_01002274 [Escherichia coli 53638], gi\|1884...	112.0	[0..7]	[75..21]
gi\|81241084, gi\|... - gi\|82776936\|ref\|YP_403285.1\| hypothetical protein SDY_1673 [Shigella dysenteriae Sd197], gi\|81241084...	111.0	[0..7]	[75..21]
gi\|124498933, gi... - gi\|124530830\|ref\|ZP_01701335.1\| conserved hypothetical protein [Escherichia coli B], gi\|124498933\|gb... gi\|189356175, gi... - gi\|189402335\|ref\|ZP_02781690.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401... gi\|189403442, gi... - gi\|189403442\|ref\|ZP_02795451.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486... gi\|188014135, gi... - gi\|188025229\|ref\|ZP_02776926.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113... gi\|189000249, gi... - gi\|189010435\|ref\|ZP_02807104.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076... gi\|189405910, gi... - gi\|189405910\|ref\|ZP_02825144.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]... gi\|190902120, gi... - gi\|191167861\|ref\|ZP_03029666.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190902120\|... gi\|189367484, gi... - gi\|189404097\|ref\|ZP_02787261.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501... gi\|189370630, gi... - gi\|189405336\|ref\|ZP_02814826.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]... YDIH_ECO57 - Uncharacterized protein YdiH OS=Escherichia coli O157:H7 GN=ydiH PE=4 SV=2 EG13967 - uncharacterized protein / Function unknown gi\|170520001, gi... - gi\|170682283\|ref\|YP_001743569.1\| hypothetical protein EcSMS35_1511 [Escherichia coli SMS-3-5], gi\|17... gi\|187769498, gi... - gi\|187776041\|ref\|ZP_02800025.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196... YDIH_SHIFL - Uncharacterized protein YdiH OS=Shigella flexneri GN=ydiH PE=4 SV=2 gi\|170019965, gi... - gi\|170019965\|ref\|YP_001724919.1\| hypothetical protein EcolC_1946 [Escherichia coli ATCC 8739], gi\|16... gi\|215486860, gi... - gi\|215486860\|ref\|YP_002329291.1\| hypothetical protein E2348C_1770 [Escherichia coli O127:H6 str. E23... gi\|217318237, gi... - gi\|217328890\|ref\|ZP_03444971.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|208738491, gi... - gi\|208818368\|ref\|ZP_03258688.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209400116, gi... - gi\|209400116\|ref\|YP_002270754.1\| hypothetical protein ECH74115_2400 [Escherichia coli O157:H7 str. E... sp\|P64476\|YDIH_ECOLI - Uncharacterized protein ydiH OS=Escherichia coli (strain K12) GN=ydiH PE=4 SV=2 gi\|193068978, gi... - gi\|193068978\|ref\|ZP_03049937.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192957... gi\|194429492, gi... - gi\|194429492\|ref\|ZP_03062014.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194412456... gi\|191171691, gi... - gi\|191171691\|ref\|ZP_03033238.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190908021\|... gi\|193065310, gi... - gi\|193065310\|ref\|ZP_03046382.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192927104\|... gi\|208810424, gi... - gi\|208810424\|ref\|ZP_03252300.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208816761, gi... - gi\|208816761\|ref\|ZP_03257881.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|194416967, gi... - gi\|194434798\|ref\|ZP_03067048.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|194422538, gi... - gi\|194438528\|ref\|ZP_03070617.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442253... gi\|75177419 - gi\|75177419\|ref\|ZP_00697508.1\| hypothetical protein SboyB_01002770 [Shigella boydii BS512] gi\|110641806, gi... - gi\|110641806\|ref\|YP_669536.1\| hypothetical protein ECP_1632 [Escherichia coli 536], gi\|110343398\|gb\|... gi\|254793302, gi... - gi\|254793302\|ref\|YP_003078139.1\| hypothetical protein ECSP_2252 [Escherichia coli O157:H7 str. TW143... EG13967 - uncharacterized protein / Function unknown	101.0	[0..14]	[75..1]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYCARLHIS EDDMSIDLDP TQLAIEFLRR DKTELSPAQY LKRLKQLELE FADLLTLSAT  60
   61 ELKEEIYFAW RLGVH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits