YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29141827, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	531 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29141827, gi|....

Description	E-value	Query Range	Subject Range
gi\|75228562 - gi\|75228562\|ref\|ZP_00715196.1\| COG4373: Mu-like prophage FluMu protein gp28 [Escherichia coli B7A]	0.0	[1..531]	[1..531]
gi\|36786750, gi\|... - gi\|37527316\|ref\|NP_930660.1\| hypothetical protein plu3442 [Photorhabdus luminescens subsp. laumondii...	0.0	[26..531]	[2..507]
gi\|84779333, gi\|... - gi\|85058813\|ref\|YP_454515.1\| hypothetical protein SG0835 [Sodalis glossinidius str. 'morsitans'], gi...	0.0	[26..531]	[2..507]
gi\|75255741, gi\|... - gi\|75255741\|ref\|ZP_00727502.1\| COG4373: Mu-like prophage FluMu protein gp28 [Escherichia coli E22], ...	0.0	[26..531]	[2..507]
gi\|34103451, gi\|... - gi\|34497595\|ref\|NP_901810.1\| portal protein [Chromobacterium violaceum ATCC 12472], gi\|34103451\|gb\|A...	0.0	[16..531]	[5..532]
gi\|33151382, gi\|... - gi\|33151382\|ref\|NP_872735.1\| Mu-like phage gp28 [Haemophilus ducreyi 35000HP], gi\|33147602\|gb\|AAP951...	0.0	[32..530]	[3..496]
VG28_HAEIN - Mu-like prophage FluMu protein gp28 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 ... VG28_HAEIN - Mu-like prophage FluMu protein gp28 OS=Haemophilus influenzae GN=HI_1500 PE=4 SV=1	0.0	[30..526]	[2..493]
gi\|49613166, gi\|... - gi\|50122640\|ref\|YP_051807.1\| putative phage-related protein [Pectobacterium atrosepticum SCRI1043], ...	0.0	[27..531]	[7..511]
gi\|57904719 - gi\|57904719\|gb\|AAW58964.1\| gp28 [Cloning vector MuNXKan] TERL_BPMU - Probable terminase, large subunit gp28 OS=Enterobacteria phage Mu GN=Mup28 PE=2 SV=1	0.0	[23..527]	[29..530]
gi\|75208645, gi\|... - gi\|75208645\|ref\|ZP_00708949.1\| COG4373: Mu-like prophage FluMu protein gp28 [Escherichia coli B171],...	0.0	[26..527]	[32..530]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSSGVILN AAGGGPEGMS PMDGRNNLAP VLPDTSALDA PPVLLPYQQR WVADTSPLKV  60
   61 IEKSRRTGIT WAEASDNVLT AASSAPAGGM NVYYIAYNQD MTVEYIQACA MWARAFNYAA 120
  121 SEIEEGFWEE DDDDKHIKTY TIKFPDSGFR IVALSSRPSN LRGRQGIIVI DEAAFHEQLD 180
  181 ELLKAALAML IWGGKVRVIS THDGDDNPFN TLIGDIRAGR QGGSVHRITF REAVSEGLFR 240
  241 RVCLRTGKEW SEASEQAWMA SVYKFYAAGA SEELDCIPAN GGGAWLSRAL IESRMSADT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	2o0hA
Description:	No description for 2o0hA was found.

Predicted Domain #2

Region A:
Residues: [300-531]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVLRLTCQEG YELLSDEVRF HETQDWLDEH LKPLLEALPA DARSFLGRDF GRSGDLSVDY  60
   61 PLLQEKNLVR RVPFVLELRN VPFRQQEQIT WYLMDGLPGL LGAAFDARGN GAYLAEYAMQ 120
  121 RYGSSRVQQV MPTEGWYREH MPPVKAALED GNLVDLPKDE DTLDDLRAVQ VVNGVPRVPE 180
  181 QRSKAKADGG KRHGDSAIAL ALAYFASREI NKGPVKASSR CRRQAARMLE GF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits