YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16502681, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16502681, gi|....

Description	E-value	Query Range	Subject Range
gi\|75228542, gi\|... - gi\|75228542\|ref\|ZP_00715176.1\| COG5566: Uncharacterized conserved protein [Escherichia coli B7A], gi...	180.0	[0..1]	[129..1]
gi\|85058794, gi\|... - gi\|85058794\|ref\|YP_454496.1\| putative phage transcriptional regulator [Sodalis glossinidius str. 'mo...	176.0	[0..1]	[129..1]
gi\|36786769, gi\|... - gi\|37527335\|ref\|NP_930679.1\| hypothetical protein plu3461 [Photorhabdus luminescens subsp. laumondii...	169.0	[0..1]	[122..1]
gi\|193066151, gi... - gi\|75255718\|ref\|ZP_00727479.1\| COG5566: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|227886031, gi... - gi\|227886031\|ref\|ZP_04003836.1\| phage transcriptional regulator [Escherichia coli 83972], gi\|2278369...	166.0	[0..1]	[126..1]
gi\|167621357 - gi\|167621357\|ref\|ZP_02389988.1\| probable bacteriophage transcriptional regulator [Burkholderia thail... gi\|48696911, gi\|... - gi\|48696911\|ref\|YP_024674.1\| gp01 [Burkholderia phage BcepMu], gi\|44829474\|gb\|AAS47841.1\| gp01 [Burk... gi\|197295400, gi... - gi\|197295400\|ref\|YP_002153941.1\| Mu protein C/ Mor gp17 transcription regulator [Burkholderia cenoce...	165.0	[0..2]	[124..1]
gi\|50122616, gi\|... - gi\|50122616\|ref\|YP_051783.1\| phage regulatory protein protein [Pectobacterium atrosepticum SCRI1043]...	156.0	[0..1]	[129..1]
gi\|188493363, gi... - gi\|75512166\|ref\|ZP_00734738.1\| COG5566: Uncharacterized conserved protein [Escherichia coli 53638], ...	155.0	[0..1]	[117..1]
gi\|34103476, gi\|... - gi\|34497620\|ref\|NP_901835.1\| bacteriophage transcriptional regulator [Chromobacterium violaceum ATCC...	154.0	[0..8]	[118..7]
RDGB_ERWCA - (Q47588) DNA-binding protein rdgB RDGB_PECCC - DNA-binding protein RdgB OS=Pectobacterium carotovorum subsp. carotovorum GN=rdgB PE=3 SV=1	139.0	[0..6]	[113..5]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLNQFRSK GPELLVELAQ HTSETVREII DIEPAIADQI GQAVANRMMQ VWGGQNVYFP  60
   61 MGMVWKVSQR DREIFREFNG RNHHELARKF GVSLQWVYSV VKRVRKEELD RMQGKLFADE 120
  121 PDVDTEKKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1rr7A
Description:	Crystal structure of the Middle Operon Regulator protein of Bacteriophage Mu
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits